View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_6 (Length: 560)

Name: NF19782_high_6
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_6
NF19782_high_6
[»] chr5 (17 HSPs)
chr5 (1-542)||(41702532-41703073)
chr5 (269-542)||(41469881-41470163)
chr5 (109-239)||(41469655-41469785)
chr5 (443-542)||(41524663-41524762)
chr5 (447-542)||(41504358-41504453)
chr5 (4-105)||(41469478-41469579)
chr5 (443-542)||(41515733-41515832)
chr5 (168-239)||(41499628-41499699)
chr5 (177-238)||(41509401-41509462)
chr5 (158-238)||(41499525-41499605)
chr5 (171-239)||(41515440-41515508)
chr5 (177-239)||(41519624-41519686)
chr5 (365-497)||(41509724-41509856)
chr5 (365-420)||(41519950-41520005)
chr5 (269-320)||(41524534-41524585)
chr5 (447-479)||(41499868-41499900)
chr5 (57-105)||(41547556-41547604)
[»] chr7 (3 HSPs)
chr7 (288-420)||(16638302-16638434)
chr7 (288-420)||(17457204-17457336)
chr7 (288-420)||(17595878-17596010)


Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 41703073 - 41702532
Alignment:
Q  1 ccacttcgcacttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703073 ccacttcgcacttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaatttt 41702974  T
Q  101 aatctgtgattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctct 200  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702973 actctgtaattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctct 41702874  T
Q  201 aattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacctctttcaagagagctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702873 aattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacctctttcaagagagctt 41702774  T
Q  301 cataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaagctgctctttaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702773 cataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaagctgctctttaag 41702674  T
Q  401 ctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702673 ctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtt 41702574  T
Q  501 tcccattgacaagttccacgcagtaccagaacaagatcatga 542  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41702573 tcccattgacaagttccacgcagtaccagaacaagatcatga 41702532  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 269 - 542
Target Start/End: Original strand, 41469881 - 41470163
Alignment:
Q  269 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacat---------atttcttctctttttctaaactcaaactcagca 359  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||  ||||||  || |         ||||| ||||||||  |||||||| ||||||||    
T  41469881 tctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactcagca 41469980  T
Q  360 tgcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtctta 459  Q
    |  | |||||||||| |||| | || || || |||| ||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||||| |    
T  41469981 tatacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgcaacttttgattctcctctctgagtctca 41470080  T
Q  460 tatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga 542  Q
    ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41470081 tatacctattctccaaaacagcttcaacactatcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga 41470163  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 41469655 - 41469785
Alignment:
Q  109 attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac 208  Q
    ||||||||  ||||||||||||  ||||||||||||| ||||||||||||||||||||||| | ||| || ||||| |||||||||| ||||||||||||    
T  41469655 attcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaac 41469754  T
Q  209 aatctttcttcttaacacatcaacttcattg 239  Q
    ||||||| ||||||  |||||||||||||||    
T  41469755 aatctttgttcttattacatcaacttcattg 41469785  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 443 - 542
Target Start/End: Original strand, 41524663 - 41524762
Alignment:
Q  443 ctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga 542  Q
    ||||||||||||||| |||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  41524663 ctcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcatga 41524762  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 542
Target Start/End: Original strand, 41504358 - 41504453
Alignment:
Q  447 tctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga 542  Q
    ||||| ||||| |||||||| |||||||||||||||||||  || |||||||| ||||||||||| |||||||||| ||||| |||||||||||||    
T  41504358 tctctaagtctcatatccctcctctccaaaacagcttcaatgctatcaaaagtgtcccattgacatgttccacgcaataccataacaagatcatga 41504453  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 41469478 - 41469579
Alignment:
Q  4 cttcgcacttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttaat 103  Q
    |||||| ||||||||||| ||||||||||||||||| |||||| ||| ||||| || |||||||||||||| ||||||||| ||||||  || |||||||    
T  41469478 cttcgcgcttctcctctgccaatttcctgctttcatgcctcaagtcactcatcattaccaaattcttctttgctgtttccttcaattcatcatttttaat 41469577  T
Q  104 ct 105  Q
    ||    
T  41469578 ct 41469579  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 443 - 542
Target Start/End: Original strand, 41515733 - 41515832
Alignment:
Q  443 ctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga 542  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||| |||||| ||||| ||||||| |||||||| |  |||| |||||| ||||||    
T  41515733 ctcttctctgagtctcatatacctattctccaaaacagcttcaacactatcaaaaatttccaattgacacgttccacgtaacaccataacaagctcatga 41515832  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 41499628 - 41499699
Alignment:
Q  168 tttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 239  Q
    ||||| ||| |||||||||||| ||||   |||||||||||||||||| ||||||||||| |||||||||||    
T  41499628 tttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacaccaacttcattg 41499699  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 41509401 - 41509462
Alignment:
Q  177 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 238  Q
    |||||||||||||||||||| |||||||||||  ||||| ||||||||| ||||| ||||||    
T  41509401 ttcaactccaaaacttcattgtctaattcaaccttcttttttcttaacatatcaagttcatt 41509462  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 41499525 - 41499605
Alignment:
Q  158 ccattttttctttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 238  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||| | ||||| ||  ||||| |||| ||| ||||||    
T  41499525 ccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcatt 41499605  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 41515440 - 41515508
Alignment:
Q  171 aacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 239  Q
    |||||| |||||||||||| ||||  |||||||||| || |||||||||||||||||| || |||||||    
T  41515440 aacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattg 41515508  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 41519624 - 41519686
Alignment:
Q  177 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 239  Q
    |||||||||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||||    
T  41519624 ttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattg 41519686  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 497
Target Start/End: Original strand, 41509724 - 41509856
Alignment:
Q  365 ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttatatcc 464  Q
    ||||| |||| ||||||| ||||||| ||||| |||||||||||||||||| ||||  |  || |||||   |||| | |  ||||||||||  | |||     
T  41509724 ccttgcaagtttctccatttcaagctcctcttgaagctttagtctctccatatcaacattctgctgcaagcgttgagtttggtctctgagtccaacatct 41509823  T
Q  465 ctactctccaaaacagcttcaacactgtcaaaa 497  Q
    |||||| |||||||| ||||||| |||||||||    
T  41509824 ctactcaccaaaacaccttcaactctgtcaaaa 41509856  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 41519950 - 41520005
Alignment:
Q  365 ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa 420  Q
    ||||| |||| ||||||| | ||||| ||||| |||||||||||||||||||||||    
T  41519950 ccttgcaagtttctccattttaagctcctcttgaagctttagtctctccatttcaa 41520005  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 41524534 - 41524585
Alignment:
Q  269 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttc 320  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||| ||||||    
T  41524534 tctattcaccttaacttctttcaaaagagcttcataactttcttgaactttc 41524585  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 41499868 - 41499900
Alignment:
Q  447 tctctgagtcttatatccctactctccaaaaca 479  Q
    ||||||||||||| |||||||||||||||||||    
T  41499868 tctctgagtcttaaatccctactctccaaaaca 41499900  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 41547556 - 41547604
Alignment:
Q  57 gttgccaaattcttctttactgtttcctccaattctccaattttaatct 105  Q
    |||||||||||||| ||||||||||| | |||||| ||| |||||||||    
T  41547556 gttgccaaattcttgtttactgtttcattcaattcaccatttttaatct 41547604  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 420
Target Start/End: Complemental strand, 16638434 - 16638302
Alignment:
Q  288 ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa 387  Q
    ||||||||||||||||||  ||| ||  |||||| |||   ||| ||||||||  |||||||   ||||||||| ||||||| |||| ||||||| | ||    
T  16638434 ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa 16638335  T
Q  388 gctgctctttaagctttagtctctccatttcaa 420  Q
    ||| | ||| ||||||| |||||  ||||||||    
T  16638334 gctccccttgaagcttttgtctcggcatttcaa 16638302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 420
Target Start/End: Original strand, 17457204 - 17457336
Alignment:
Q  288 ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa 387  Q
    ||||||||||||||||||  ||| ||  |||||| |||   ||| ||||||||  |||||||   ||||||||| ||||||| |||| ||||||| | ||    
T  17457204 ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa 17457303  T
Q  388 gctgctctttaagctttagtctctccatttcaa 420  Q
    ||| | ||| ||||||| |||||  ||||||||    
T  17457304 gctccccttgaagcttttgtctcggcatttcaa 17457336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 420
Target Start/End: Complemental strand, 17596010 - 17595878
Alignment:
Q  288 ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa 387  Q
    ||||||||||||||||||  ||| ||  |||||| |||   ||| ||||||||  |||||||   ||||||||| ||||||| |||| ||||||| | ||    
T  17596010 ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa 17595911  T
Q  388 gctgctctttaagctttagtctctccatttcaa 420  Q
    ||| | ||| ||||||| |||||  ||||||||    
T  17595910 gctccccttgaagcttttgtctcggcatttcaa 17595878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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