View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19782_high_60 (Length: 256)
Name: NF19782_high_60
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_60 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 45961036 - 45961276
Alignment:
| Q |
16 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctacca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45961036 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctacca |
45961135 |
T |
|
| Q |
116 |
aagctaaagtttgtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45961136 |
aagctaaagtttgtttatttgacaaacgtttccaaaatgcatgaaagtagctttgtttttgtttctcttgatttacttctggattatgactgtgaaaagg |
45961235 |
T |
|
| Q |
216 |
acctattgagataaactttggtgtataagcatcttcattca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45961236 |
acctattgagataaactttggtgtataagcatcttcattca |
45961276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 142636 - 142396
Alignment:
| Q |
16 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctacca |
115 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
142636 |
atcatttccaaaaacttctcatccgtacaaagttcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtacca |
142537 |
T |
|
| Q |
116 |
aagctaaagtttgtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaagg |
215 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||| |||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
142536 |
aagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtgaaaagg |
142437 |
T |
|
| Q |
216 |
acctattgagataaactttggtgtataagcatcttcattca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142436 |
acctattgagataaactttggtgtataagcatcttcattca |
142396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 297841 - 297724
Alignment:
| Q |
16 |
atcatttccaaaaacttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctacca |
115 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
297841 |
atcatttccaaaagcttctcatccttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtacca |
297742 |
T |
|
| Q |
116 |
aagctaaagtttgtttat |
133 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
297741 |
aagctaaagtttgtttat |
297724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 292693 - 292569
Alignment:
| Q |
128 |
gtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagat |
227 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
292693 |
gtttatttgacaaatgtttccaaaatg----aaagtacttttgtttctgtttctcttgatttagttcagggttatgactgtgaagaggacctattgagat |
292598 |
T |
|
| Q |
228 |
aaactttggtgtataagcatcttcattca |
256 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
292597 |
aaactttggtgtgtaagcatcttcattca |
292569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 27123807 - 27123928
Alignment:
| Q |
55 |
ttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttccaaaatg |
154 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||| |||||| |||||||||||| | ||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
27123807 |
ttggaataacagttacttatattttcactgttttattcaaggaaagctttatatcgtcccaaagcc------tgtttatttgataaacatttccaaaatg |
27123900 |
T |
|
| Q |
155 |
cattaaagtacctttgtttttgtttctc |
182 |
Q |
| |
|
|| ||||||| ||||||| |||||||| |
|
|
| T |
27123901 |
aatgaaagtacttttgtttgtgtttctc |
27123928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University