View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_71 (Length: 246)
Name: NF19782_high_71
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 41405779 - 41405556
Alignment:
| Q |
23 |
aaataattttacactgacaatgcttgttaattaaactcttattagttttatatgggaactaattgttagcaaaaccctttctttacatgggaactaatac |
122 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41405779 |
aaataattttacaccgacaatgcttgttaattaaactcttattagttttatatgggaactaattgttagcaaaaccctttctttacatgggaactaatac |
41405680 |
T |
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| Q |
123 |
acaccataactctttaagcaaccctacacagcatctgccacagtacaatcctatttacaaattaatcaacaaataaatcctatgctgcttcaaaaaatca |
222 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41405679 |
acaccaaaactctttaagcaaccctgcacagcatctgccacagtacaatcctatttacaaattaatcaacatataaatcctatgctgcttcaaaaaatca |
41405580 |
T |
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| Q |
223 |
tcaatgaactgaaagtctgaaaca |
246 |
Q |
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|||||||||||||||||||||||| |
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| T |
41405579 |
tcaatgaactgaaagtctgaaaca |
41405556 |
T |
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