View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_79 (Length: 234)

Name: NF19782_high_79
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_79
NF19782_high_79
[»] chr3 (2 HSPs)
chr3 (15-219)||(12734887-12735091)
chr3 (26-219)||(32578973-32579157)
[»] scaffold0464 (1 HSPs)
scaffold0464 (15-219)||(7839-8034)
[»] chr7 (7 HSPs)
chr7 (26-219)||(19357685-19357872)
chr7 (26-219)||(19351177-19351361)
chr7 (26-219)||(19779380-19779564)
chr7 (26-219)||(19887819-19888003)
chr7 (26-219)||(19721799-19721983)
chr7 (183-219)||(18953167-18953203)
chr7 (183-219)||(18983214-18983250)
[»] chr2 (3 HSPs)
chr2 (26-182)||(18908917-18909073)
chr2 (26-180)||(18920873-18921027)
chr2 (26-159)||(18913665-18913798)
[»] chr6 (1 HSPs)
chr6 (36-219)||(14749175-14749349)
[»] chr5 (1 HSPs)
chr5 (182-214)||(28764166-28764198)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 12734887 - 12735091
Alignment:
Q  15 cataggcgattcatcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaa 114  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  12734887 catagacgatccatcaatacagtaacagatggctcaacaggtggtatttcaacaaaaccgttgggtggcaacaactgcctaaatgtctctgtagccagaa 12734986  T
Q  115 caagtgataagatcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccact 214  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  12734987 caagtgatacgatcacaaattggttgactgaaatatcattccattcatattcattcatatttttaatatttcgaatagccaaccagttaacagtgccact 12735086  T
Q  215 cacat 219  Q
     ||||    
T  12735087 tacat 12735091  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 32578973 - 32579157
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||| || |  | ||||||||| || | | ||||||| |||| |||| ||||||||||     
T  32578973 catcaacacagtaacagctggctcaaccggtggtacttcaacaaatccctgcgatggcagcaaatgtcggtatgtctccgtagtcagatcaagtgataaa 32579072  T
Q  126 atcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
    || | |||||| | ||||||||||||||||| |||||||||| ||          ||||||||||||||||||| |||||||||||||||||||    
T  32579073 atgagaaattgctcgattgaaatatcattcctttcatattcagtc---------ttatttcgaatagccaaccaattaatagtgccactcacat 32579157  T

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Target: scaffold0464 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 8034 - 7839
Alignment:
Q  15 cataggcgattcatcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaa 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8034 catagacgattcatcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctaaatgtctctgtagccagaa 7935  T
Q  115 caagtgataagatcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccact 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||    
T  7934 caagtgatacgatcacaaattggttgattgaaatatcattccattcatattcattcatatttcg---------aatagccaaccagttaacagtgccact 7844  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 19357872 - 19357685
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    |||||||||||| ||| |||||| || |||||||||||||||||||||| | |||||||||||||||||  ||||||| || |||||| ||||||| | |    
T  19357872 catcaatacagttacaaatggctgaataggtggtacttcaacaaaaccgctaggtggcagcaactgcctatatgtctccgtggccagatcaagtgagacg 19357773  T
Q  126 atcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
    ||||||||||| |  |||| |||||||  ||||||||||| | |||    ||  |||||||||||||||||||||||||||||||| |||||||    
T  19357772 atcacaaattgatcaattgtaatatcacgccattcatattga-tca---gtc--atatttcgaatagccaaccagttaatagtgcctctcacat 19357685  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 19351177 - 19351361
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctga-atgtctctgtagccagaacaagtgataa 124  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||    |||||||  |||||  ||| ||||||| ||| ||||| ||||||| |     
T  19351177 catcaatacagtaacggatggctcagcaggtggtacttcaacaaaaccacgaggtggcaaaaactg-ttgatatgtctccgtacccagatcaagtgaaat 19351275  T
Q  125 gatcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
     ||||||||||| | ||||  |||||||||||||| ||||| | |         ||||||| |||||||||||||||||||||  ||||||||||    
T  19351276 aatcacaaattgctcgattctaatatcattccatttatatttagt---------aatattttgaatagccaaccagttaatagatccactcacat 19351361  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 19779564 - 19779380
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||| || |  |||||| |||| ||   | | ||||| |||| |||| ||||||| | |    
T  19779564 catcaatacagtaacagctggatcaacaggtggtacatcaacaaatccctgaggtggccgcaaatgttggtacgtctcggtagtcagatcaagtgagagg 19779465  T
Q  126 atcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
    || | |||||| |  ||||||||||||||||| ||||||||  ||          ||||| |||||| ||||||||||||||||||||||||||    
T  19779464 atgagaaattgatcaattgaaatatcattccactcatattcggtc---------ttattttgaatagtcaaccagttaatagtgccactcacat 19779380  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 19887819 - 19888003
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||| || |  |||||| |||| ||   | | ||||| |||| |||| ||||||| | |    
T  19887819 catcaatacagtaacagctggatcaacaggtggtacatcaacaaatccctgaggtggccgcaaatgttggtacgtctcggtagtcagatcaagtgagagg 19887918  T
Q  126 atcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
    || | |||||| |  ||||||||||||||||| ||||||||  ||          ||||| |||||| ||||||||||||||||||||||||||    
T  19887919 atgagaaattgatcaattgaaatatcattccactcatattcggtc---------ttattttgaatagtcaaccagttaatagtgccactcacat 19888003  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 19721983 - 19721799
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctga-atgtctctgtagccagaacaagtgataa 124  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| || |  ||||||| || |||  ||| ||||||| ||||||||| |||| || |     
T  19721983 catcaatacagtaacagacggctcaacagttggtacttcaacaaacccctcaggtggcaacagctg-ttgatatgtctccgtagccagatcaagcgagac 19721885  T
Q  125 gatcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
     || |||||||| | || | |||||||| |||||| ||| ||| ||          | ||||||||||||||||||||||||||||| |||||||    
T  19721884 aattacaaattgctcgactaaaatatcagtccattgatactcagtc---------gtgtttcgaatagccaaccagttaatagtgccgctcacat 19721799  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 18953167 - 18953203
Alignment:
Q  183 tttcgaatagccaaccagttaatagtgccactcacat 219  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  18953167 tttcgaatggccaaccagttaacagtgccactcacat 18953203  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 18983214 - 18983250
Alignment:
Q  183 tttcgaatagccaaccagttaatagtgccactcacat 219  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  18983214 tttcgaatggccaaccagttaacagtgccactcacat 18983250  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 18908917 - 18909073
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||||| | ||||||||||| ||||   ||||||||||| ||| | |||| || |      
T  18908917 catcaacacactaacagacggttcaacaggtggtacttcaacaaaaccgctaggtggcagcaattgccgatatgtctctgtatccaaatcaagcgagact 18909016  T
Q  126 atcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaata 182  Q
    ||||||||||| ||||| | |||||||||||||||||||||| || ||| |||||||    
T  18909017 atcacaaattgtttgatagtaatatcattccattcatattcagtcttatctcgaata 18909073  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 18920873 - 18921027
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||||| | ||||||||||| ||||   ||||||||||| ||| | |||| || |      
T  18920873 catcaacacactaacagacggttcaacaggtggtacttcaacaaaaccgctaggtggcagcaattgccgatatgtctctgtaaccaaatcaagcgagact 18920972  T
Q  126 atcacaaattggttgattgaaatatcattccattcatattcattcatatttcgaa 180  Q
    ||||||||||| ||||| | |||||||||||||||||||||| || ||| |||||    
T  18920973 atcacaaattgtttgatagtaatatcattccattcatattcagtcttatctcgaa 18921027  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 18913665 - 18913798
Alignment:
Q  26 catcaatacagtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataag 125  Q
    |||||| ||| ||||||| || ||||| |||||| |||||||||||||| | ||||||| ||||||   | ||||||||||||||| | |||| || |      
T  18913665 catcaacacactaacagacggttcaacgggtggtgcttcaacaaaaccgctaggtggcaacaactgttggtatgtctctgtagccaaatcaagcgagact 18913764  T
Q  126 atcacaaattggttgattgaaatatcattccatt 159  Q
    ||||||||||| |  || | ||||||||||||||    
T  18913765 atcacaaattgttcaatggtaatatcattccatt 18913798  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14749349 - 14749175
Alignment:
Q  36 gtaacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaatt 135  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||  ||  | | | ||||||| ||||  ||| ||||||| |  || | |||||    
T  14749349 gtaacagatggctcaacagatggtacttcaacaaatccctgaggtggcaagaaacgacggtatgtctccgtagttagatcaagtgaaacaatgagaaatt 14749250  T
Q  136 ggttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacat 219  Q
    ||| |||||||||||||||| | ||||||||  || ||||| |||||         ||||||||||||||| ||||||||||||    
T  14749249 ggtcgattgaaatatcattctaatcatattcggtcttattttgaata---------gccaaccagttaatactgccactcacat 14749175  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 28764166 - 28764198
Alignment:
Q  182 atttcgaatagccaaccagttaatagtgccact 214  Q
    |||| ||||||||||||||||||||||||||||    
T  28764166 attttgaatagccaaccagttaatagtgccact 28764198  T

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