View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_80 (Length: 234)

Name: NF19782_high_80
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_80
NF19782_high_80
[»] chr7 (2 HSPs)
chr7 (1-216)||(6670616-6670847)
chr7 (157-204)||(23257027-23257074)
[»] scaffold0073 (2 HSPs)
scaffold0073 (106-192)||(40552-40638)
scaffold0073 (1-40)||(40720-40759)
[»] chr3 (4 HSPs)
chr3 (118-203)||(51464774-51464859)
chr3 (113-204)||(3570156-3570248)
chr3 (2-41)||(3570327-3570366)
chr3 (1-40)||(51464953-51464992)
[»] chr5 (4 HSPs)
chr5 (118-202)||(21345380-21345464)
chr5 (118-202)||(25802845-25802929)
chr5 (1-40)||(25802712-25802751)
chr5 (1-40)||(21345565-21345604)
[»] chr1 (8 HSPs)
chr1 (106-209)||(36776801-36776904)
chr1 (119-209)||(159042-159132)
chr1 (106-180)||(9133203-9133277)
chr1 (1-39)||(159236-159274)
chr1 (156-202)||(15199516-15199562)
chr1 (156-201)||(32925127-32925172)
chr1 (1-30)||(36776972-36777001)
chr1 (156-204)||(15218602-15218650)
[»] chr6 (3 HSPs)
chr6 (118-203)||(23667235-23667320)
chr6 (106-202)||(21273193-21273289)
chr6 (1-40)||(23667396-23667435)
[»] chr4 (2 HSPs)
chr4 (106-202)||(21279064-21279160)
chr4 (1-40)||(21278923-21278962)
[»] chr2 (4 HSPs)
chr2 (2-38)||(18856967-18857003)
chr2 (156-203)||(22834080-22834127)
chr2 (1-36)||(22834252-22834287)
chr2 (160-204)||(18857131-18857175)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6670847 - 6670616
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcaggnnnnnnnnngaatttgcaaaaggtttcat------cccgttctcagaatcctcttcctc 94  Q
    ||||||||||||||||||||||||||||||||||||||||          |||  ||||||||| |||||      |||| ||||||  |||||||||||    
T  6670847 gaatgaggtgccatttaaagaggtagtttcaaagtctcag--aagaaaaagaacgtgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctc 6670750  T
Q  95 cgtttaaatga------------tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgtt 182  Q
    |||||||||||            ||||| || ||||||||||||||||| ||||||| ||||||||||| || | |||||||||||||||||||||||||    
T  6670749 cgtttaaatgaataattttgttttggaatatccgagggattggtaataatgattccatgcttgatactacgtggctcactatgttgccttcttctttgtt 6670650  T
Q  183 ggcggagtttgctagggacaggtatggggtgtct 216  Q
    |||||| ||| ||||||||||  ||||| |||||    
T  6670649 ggcggattttactagggacagaaatgggatgtct 6670616  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 23257074 - 23257027
Alignment:
Q  157 ttcactatgttgccttcttctttgttggcggagtttgctagggacagg 204  Q
    |||||||||||||||||||||||||| ||||| ||||| || ||||||    
T  23257074 ttcactatgttgccttcttctttgtttgcggattttgcaagagacagg 23257027  T

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Target: scaffold0073 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 40638 - 40552
Alignment:
Q  106 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagttt 192  Q
    ||||| ||||| |||||||||||||| ||||||  ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  40638 tggaagattcgggggattggtaataatgattccctgcttgatactacgtggttcactatgttgccttcttctttgttggcggagttt 40552  T

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Target: scaffold0073; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40759 - 40720
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 40  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  40759 gaatgaggtaccatttaaagaagtagtttcaaagtctcag 40720  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 51464859 - 51464774
Alignment:
Q  118 gggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggacag 203  Q
    |||||||||||||| ||||||  ||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  51464859 gggattggtaataatgattccctgcttgatactacgtggttcactatgttgccttcttctttgttggcggattttactagggacag 51464774  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 3570248 - 3570156
Alignment:
Q  113 ttcgagggattggtaataacgattcca-ggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggacagg 204  Q
    |||| |||||||||||||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||    
T  3570248 ttcgggggattggtaataatgattccctggcttgatactatgtggttcactatgttgccttcttctttgttggcagattttactagggacagg 3570156  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 3570366 - 3570327
Alignment:
Q  2 aatgaggtgccatttaaagaggtagtttcaaagtctcagg 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3570366 aatgaggtgccatttaaagaggtagtttcaaagtctcagg 3570327  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51464992 - 51464953
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  51464992 gaatgaggtgtcatttaaagaggtagtttcaaagtctcag 51464953  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 21345464 - 21345380
Alignment:
Q  118 gggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggaca 202  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||| | |||||||| ||||    
T  21345464 gggattggtaataatgattccaggcttgatactacgtggttcactatgttgcattcttctttgttggcgaattttgctagagaca 21345380  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 25802845 - 25802929
Alignment:
Q  118 gggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggaca 202  Q
    |||||||||||||| ||||||  ||||||||||| || ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  25802845 gggattggtaataatgattccctgcttgatactacgtggttcactatgttgccttcttctttgttggcggattttactagggaca 25802929  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25802712 - 25802751
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25802712 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 25802751  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21345604 - 21345565
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  21345604 gaatgaggtaccatttaaagaggtagtttcaaagtctcag 21345565  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 36776904 - 36776801
Alignment:
Q  106 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggacaggt 205  Q
    ||||||||||| |||||||||||||| | ||||  ||||||||||| || |||||||| |||||||||||||||||||||||| ||| ||||||| |||     
T  36776904 tggaacattcgggggattggtaataatggttcccagcttgatactacgtggttcactacgttgccttcttctttgttggcggattttactagggaaagga 36776805  T
Q  206 atgg 209  Q
    ||||    
T  36776804 atgg 36776801  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 159132 - 159042
Alignment:
Q  119 ggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggacaggtatgg 209  Q
    ||||| ||||||| ||||| ||||||||||||| || ||| ||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||    
T  159132 ggattagtaataatgattctaggcttgatactacgtggtttactatgttgtcttcttctttgttagcggattttgctagggaaaggaatgg 159042  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 9133277 - 9133203
Alignment:
Q  106 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttg 180  Q
    |||||||| || |||||||||||||| |||| |||||||||||||| || ||||||||  |||||||||||||||    
T  9133277 tggaacatccgggggattggtaataatgatttcaggcttgatactacgtggttcactagtttgccttcttctttg 9133203  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 159274 - 159236
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  159274 gaatgaggtgccatttaaagaggtagtttcaaagtctca 159236  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 15199562 - 15199516
Alignment:
Q  156 gttcactatgttgccttcttctttgttggcggagtttgctagggaca 202  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  15199562 gttcactacgttgccttcttctttgttggcggattttgcaagggaca 15199516  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 32925172 - 32925127
Alignment:
Q  156 gttcactatgttgccttcttctttgttggcggagtttgctagggac 201  Q
    ||||||||||||| |||||| |||||||||||| ||||| ||||||    
T  32925172 gttcactatgttgtcttcttatttgttggcggattttgcaagggac 32925127  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 36777001 - 36776972
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttc 30  Q
    ||||||||||||||||||||||||||||||    
T  36777001 gaatgaggtgccatttaaagaggtagtttc 36776972  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 15218650 - 15218602
Alignment:
Q  156 gttcactatgttgccttcttctttgttggcggagtttgctagggacagg 204  Q
    |||||||  |||||||||||||||||||||||| ||| | |||||||||    
T  15218650 gttcactgcgttgccttcttctttgttggcggattttccaagggacagg 15218602  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 23667320 - 23667235
Alignment:
Q  118 gggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggacag 203  Q
    |||||||||||||| ||||||  ||||| ||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  23667320 gggattggtaataatgattccctgcttgttactacgtggttcactatgttgccttcttctttgttggcggattttactagggacag 23667235  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 21273193 - 21273289
Alignment:
Q  106 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggaca 202  Q
    |||||||| || |||||||||||||| ||||||   |||||||||  || |||||||||| |||||||||||||||||||||| ||| |||||||||    
T  21273193 tggaacatccgggggattggtaataatgattccctacttgatacttcgtggttcactatgctgccttcttctttgttggcggattttactagggaca 21273289  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23667435 - 23667396
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  23667435 gaatgaggtgccatttaaagaggtagtttccaagtctcag 23667396  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 21279064 - 21279160
Alignment:
Q  106 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgccttcttctttgttggcggagtttgctagggaca 202  Q
    |||||||| ||  ||||||||||||  |||| |||||||||||||| || |||||||||||||||||||||||||||||| || ||| |||||||||    
T  21279064 tggaacatccggaggattggtaatattgatttcaggcttgatactacgtggttcactatgttgccttcttctttgttggcagatttttctagggaca 21279160  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21278923 - 21278962
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21278923 gaatgaggtgccatttaaagaggtagtttcaaagtctcag 21278962  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 18856967 - 18857003
Alignment:
Q  2 aatgaggtgccatttaaagaggtagtttcaaagtctc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  18856967 aatgaggtgccatttaaagaggtagtttcaaagtctc 18857003  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 22834127 - 22834080
Alignment:
Q  156 gttcactatgttgccttcttctttgttggcggagtttgctagggacag 203  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  22834127 gttcactatgttgtcttcttctttgttggcggattttgcaagggacag 22834080  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22834287 - 22834252
Alignment:
Q  1 gaatgaggtgccatttaaagaggtagtttcaaagtc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22834287 gaatgaggtgccatttaaagaggtagtttcaaagtc 22834252  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 18857131 - 18857175
Alignment:
Q  160 actatgttgccttcttctttgttggcggagtttgctagggacagg 204  Q
    |||||||||||||||||||||||| | || |||||||||||||||    
T  18857131 actatgttgccttcttctttgttgacagattttgctagggacagg 18857175  T

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