View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_93 (Length: 201)

Name: NF19782_high_93
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_93
NF19782_high_93
[»] chr4 (6 HSPs)
chr4 (12-179)||(24733455-24733622)
chr4 (1-169)||(12637867-12638036)
chr4 (95-178)||(24736058-24736141)
chr4 (17-84)||(55322485-55322552)
chr4 (18-89)||(36050600-36050671)
chr4 (18-89)||(36053859-36053930)
[»] chr7 (2 HSPs)
chr7 (14-124)||(6102803-6102913)
chr7 (1-84)||(4257477-4257560)
[»] chr1 (3 HSPs)
chr1 (18-179)||(16544230-16544391)
chr1 (1-179)||(25541213-25541394)
chr1 (18-89)||(23405618-23405689)
[»] chr2 (2 HSPs)
chr2 (49-171)||(28860610-28860730)
chr2 (18-89)||(45327547-45327618)
[»] chr3 (1 HSPs)
chr3 (11-84)||(14029259-14029332)
[»] chr8 (2 HSPs)
chr8 (18-89)||(44765210-44765281)
chr8 (18-82)||(44761910-44761974)
[»] chr5 (1 HSPs)
chr5 (51-89)||(41709470-41709508)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 24733622 - 24733455
Alignment:
Q  12 tcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgtta 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||| ||||||    
T  24733622 tcattataagataactacaatggctacataatagcgcttcttagtaactaactaatagaataggcctaaaatacccttctagaaactagttgagtcgtta 24733523  T
Q  112 ttactttactagaataaaatgagtcacccatgaatctctcttcgggattatacgctctttgggacttc 179  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  24733522 ttactttactagaataaaatgagtcacccatgaatctcacttcgagattgtacgctctttgcgacttc 24733455  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12638036 - 12637867
Alignment:
Q  1 cttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagacccttctagtaactag 100  Q
    |||| |||| |||||||||||||||||| || ||||||| |||||||||||||||| |||| |||||||||||||| ||||||| ||| |||| | ||||    
T  12638036 cttgtggatcctcattataagataactacaacggctacacaatagcgcttcttagtcactaactaatagaatatgcttaaaagatcctcctagaatctag 12637937  T
Q  101 ttgaatcgttattactttactagaataaaatg-agtcacccatgaatctctcttcgggattatacgctct 169  Q
      || || |||||  ||||||||||||| ||| ||||||||||||| || |||||||| || ||||||||    
T  12637936 ccgagtcattattcttttactagaataagatgaagtcacccatgaacctttcttcgggcttgtacgctct 12637867  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 24736141 - 24736058
Alignment:
Q  95 aactagttgaatcgttattactttactagaataaaatgagtcacccatgaatctctcttcgggattatacgctctttgggactt 178  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||  ||||||||| || ||||||||||||||    
T  24736141 aactagttgagtcgttattactttactaaaataaaatgagtcacctatgaatctcctttcgggattgtatgctctttgggactt 24736058  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 55322485 - 55322552
Alignment:
Q  17 ataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaaga 84  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||| ||||||||||||||||||||||    
T  55322485 ataagataactacaataactacacaatagcactgcttaataactaactaatagaatatgcctaaaaga 55322552  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 36050671 - 36050600
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagaccctt 89  Q
    |||| |||||| || ||||||  ||||||  | ||||||||||| |||||||||||||||||||||| ||||    
T  36050671 taagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctt 36050600  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 36053930 - 36053859
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagaccctt 89  Q
    |||| |||||| || ||||||  ||||||  | ||||||||||| |||||||||||||||||||||| ||||    
T  36053930 taagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctt 36053859  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 6102913 - 6102803
Alignment:
Q  14 attataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgttatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||    
T  6102913 attataagataactaaaatggctacataatagcgcttcttagtaactacctaatagaatatgcctaaaagactcttctggtaactagttgagtcgttatt 6102814  T
Q  114 actttactaga 124  Q
    |||||||||||    
T  6102813 actttactaga 6102803  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4257477 - 4257560
Alignment:
Q  1 cttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaaga 84  Q
    |||| |||| |||||||||||||||||| ||  |||||| ||||||||||||||||||||| |||||||||||||  |||||||    
T  4257477 cttgtggatcctcattataagataactacaacagctacacaatagcgcttcttagtaactaactaatagaatatgtttaaaaga 4257560  T

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Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 16544391 - 16544230
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgttattactt 117  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||  ||||| |||| ||||| ||  ||    
T  16544391 taagataactacaatggccacataatagcgcttcttagtaactaactagtagagtatgcctaaaagatccttctaaaaactacttgagtcgttcttcttt 16544292  T
Q  118 tactagaataaaatgagtcacccatgaatctctcttcgggattatacgctctttgggacttc 179  Q
    ||||||||| | | |||||||  ||||| |||||||| |  || || |||||||| ||||||    
T  16544291 tactagaatgagacgagtcacttatgaacctctcttcagacttgtatgctctttgtgacttc 16544230  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 25541213 - 25541394
Alignment:
Q  1 cttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaa-ctatctaatagaatatgcctaaaagacccttctagtaacta 99  Q
    |||| |||| ||||||||| |||||||| || ||||| | |||||| ||||||||||| ||| |||||| ||||   |||||||| |||| ||| ||| |    
T  25541213 cttgtggatcctcattataggataactacaacggctatacaatagcacttcttagtaaactacctaataaaatacatctaaaagatccttttagaaacca 25541312  T
Q  100 gttgaatcgttattactttactagaataaaatgag--tcacccatgaatctctcttcgggattatacgctctttgggacttc 179  Q
    | ||| || ||||   ||| ||| ||||| |||||  ||||||||||| ||||||||| | || ||||||||||| ||||||    
T  25541313 gctgagtcattatccttttgctataataagatgagagtcacccatgaacctctcttcgagcttgtacgctctttgtgacttc 25541394  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 23405618 - 23405689
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagaccctt 89  Q
    ||||||||||| || ||||||| |||||   | ||||||||||| |||||||||||||||||||||| ||||    
T  23405618 taagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaagatcctt 23405689  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 28860730 - 28860610
Alignment:
Q  49 ttcttagtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgttattactttactagaataaaatgagtcacccatgaatct 148  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||  |||||| ||| || |||||  ||||||||||||| |||||||| ||||| | ||    
T  28860730 ttcttagtaactaactaatataatatgcctaaaagatccttctaaaaactagatgagtcattatt-ttttactagaataagatgagtca-ccatgtacct 28860633  T
Q  149 ctcttcgggattatacgctcttt 171  Q
    ||||||||| || ||||||||||    
T  28860632 ctcttcgggcttgtacgctcttt 28860610  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 45327547 - 45327618
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagaccctt 89  Q
    ||||||||||| || ||||||| |||||   | ||||||||||| |||||||||||||||||||||| ||||    
T  45327547 taagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaagatcctt 45327618  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 14029332 - 14029259
Alignment:
Q  11 ctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaaga 84  Q
    |||||||||||||||||| || ||||||| |||| | || ||||||||||| |||||||||||||| |||||||    
T  14029332 ctcattataagataactacaacggctacacaataacactgcttagtaactaactaatagaatatgcttaaaaga 14029259  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 44765281 - 44765210
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagaccctt 89  Q
    |||| |||||| || ||||||  ||||||  | ||||||||||| |||||||||||||||||||||| ||||    
T  44765281 taagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctt 44765210  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 44761974 - 44761910
Alignment:
Q  18 taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaa 82  Q
    |||| |||||| || ||||||| ||||||  | ||||||||||| ||||||||||||| ||||||    
T  44761974 taagctaactacaacggctacacaatagcattgcttagtaactaactaatagaatatgtctaaaa 44761910  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 41709508 - 41709470
Alignment:
Q  51 cttagtaactatctaatagaatatgcctaaaagaccctt 89  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41709508 cttagtaactaactaatagaatatgcctaaaagatcctt 41709470  T

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