View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_10 (Length: 533)
Name: NF19782_low_10
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 21120137 - 21120639
Alignment:
| Q |
17 |
ttttgtttgtttgtattgaattaaaatgtggctagttgcttataaattt---acctgtggaatagaattttggttggtttatgtgtattactagtgaatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
21120137 |
ttttgtttgtttgtattgaattaaaatgtggctagttgcttataaattttgaacctgtggaatagaattgtggttggtttatgtgtattactagagaatg |
21120236 |
T |
|
| Q |
114 |
tcgtattacagcgtgcaatatctatgctacatgattggagagcagctcgtcaaacttgtaatccgcccactccccaaaataagtcttttggacccataaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21120237 |
tcgtattacagcgtgcaatatctatgctacatgattggagagcagctcgtcaaacttgtaatccgcccactccccaaaataagtcttttggaaccataaa |
21120336 |
T |
|
| Q |
214 |
atggacaaagccgactaaaggacggatgaaatgcaacattgatgtgtcctttttctgcgcatgatgacaaggtttgtataggagtgtgcataagatatga |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120337 |
atggacaaagccgagtaaaggacggatgaaatgcaacattgatgtgtcctttttctgcgcatgatgacaaggtttgtataggagtgtgcataagatatga |
21120436 |
T |
|
| Q |
314 |
tagatgtgcttttattttggctaaaacgggattctttaaaccaaaatgagaaatacatattggagaagttttatgacttttattagcgcttaactgggtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120437 |
tagatgtgcttttattttggctaaaacgggattctttaaaccaaaatgagaaatacatattggagaagttttatgacttttattagcgcttaactgggtt |
21120536 |
T |
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| Q |
414 |
tatgaactaaacttgagtcttattgattttgagcttgattcaaaaagaatggttgacatctttacttcccgaaacatgatgcaacaaaacaaggggctat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120537 |
tatgaactaaacttgagtcttattgattttgagcttgattcaaaaagaatggttgacatctttacttcccgaaacatgatgcaacaaaacaaggggctat |
21120636 |
T |
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| Q |
514 |
ttt |
516 |
Q |
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||| |
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| T |
21120637 |
ttt |
21120639 |
T |
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