View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_12 (Length: 504)

Name: NF19782_low_12
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_12
NF19782_low_12
[»] chr5 (1 HSPs)
chr5 (55-504)||(3583249-3583698)


Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 55 - 504
Target Start/End: Original strand, 3583249 - 3583698
Alignment:
Q  55 taatcatattattcaagcgtggggaagatctgtatggaatatatttatttctttttcgcaatatcataaataacatgtaaaagttatctatttcgctata 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3583249 taatcatattattcaagcgtggggaagatctgtatggaatatatttatttctttttcgcaatatcataaataacatgtaaaagttatctatttcgctata 3583348  T
Q  155 gatttacaattgcctaaaacgaagatccacacacagattcaaacaagaaattgatcttcaaagatcatgaaagttttgtcatatatttcaatgagaaatc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3583349 gatttacaattgcctaaaacgaagatccacacacagattcaaacaagaaattgatcttcaaagatcatgaaagttttgtcatatatttcaatgagaaatc 3583448  T
Q  255 atgaccaaaacaaggagcgtgattctatatccagcaaatgaggaagtagatcttacatgggagaaagatgacttcactaaatagtttctggctctaaact 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3583449 atgaccaaaacaaggagcgtgattctatatccagcaaatgaggaagtagatcttacatgggagaaagatgacttcactaaatagtttctggctctaaact 3583548  T
Q  355 gagaccaaaatacccaacacaaacaaatagggtagttcaagaaagtgcttcatttgttcaatgcaattatgctcttagaagtccaaagatcacaaatagc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3583549 gagaccaaaatacccaacacaaacaaatagggtagttcaagaaagtgcttcatttgttcaatgcaattatgctcttagaagtccaaagatcacaaatagc 3583648  T
Q  455 ctcaatttttgtccctgatatatgtacaagaatatggtctgatggcaatc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3583649 ctcaatttttgtccctgatatatgtacaagaatatggtctgatggcaatc 3583698  T

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