View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_13 (Length: 488)
Name: NF19782_low_13
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 8920852 - 8921326
Alignment:
| Q |
10 |
tgttatgttaatatttttctactttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaaccaactaaattaatcatcc |
109 |
Q |
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| T |
8920852 |
tgttatgttaatatttttctactttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaacgaactaaattaatcatcc |
8920951 |
T |
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| Q |
110 |
ctggaacaattgttttgttggcatgacattggaaaagaaaaagagtgagaaaattaattaagttttgcgttgctatatatgaattaat------------ |
197 |
Q |
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| T |
8920952 |
ctggaacaattgttttgttggcatgacattggaaaagaaaaagagtgagaaaattaattaaggcatgcgtagctatatatgaattaatcataatttagag |
8921051 |
T |
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| Q |
198 |
-aacaggttatttatgctgtgaccttatttatcaaggcgattgaggtaaaataggtgagacatgcattacaccttgctgaattaaaggtaatgtatccct |
296 |
Q |
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| T |
8921052 |
caacaggttatttatgctgtgaccttat----caaggcgattgaggtaaaataggtgagatatgcattacaccttgatgaattaaaggtaatgtatctct |
8921147 |
T |
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| Q |
297 |
aatgacaagtataattcaattcttaaacgaatgagatagtgatcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921148 |
aatgacaagtataattcaattcttaaacgaatgagatagtgatcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctct |
8921247 |
T |
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| Q |
397 |
ctccacttcaagagacacaatctggcgcaggcactatagaaagcaacactgcatgtgagtaaagacctaaagttgaatg |
475 |
Q |
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| T |
8921248 |
ctccacttcatgagacacaatctggcgcaggcactatagaaagcaacactgcatgtgagtaaagacctaaagttgaatg |
8921326 |
T |
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