View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_15 (Length: 463)

Name: NF19782_low_15
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_15
NF19782_low_15
[»] chr7 (16 HSPs)
chr7 (12-463)||(19937422-19937873)
chr7 (12-463)||(19968561-19969012)
chr7 (68-451)||(47601796-47602182)
chr7 (315-419)||(20230360-20230464)
chr7 (315-431)||(20262928-20263044)
chr7 (354-453)||(20287990-20288089)
chr7 (318-453)||(20293322-20293457)
chr7 (313-419)||(20242308-20242414)
chr7 (66-164)||(20293085-20293183)
chr7 (315-400)||(20169341-20169426)
chr7 (219-265)||(20302431-20302477)
chr7 (348-401)||(20006650-20006703)
chr7 (72-156)||(20006889-20006973)
chr7 (219-263)||(20063946-20063990)
chr7 (219-263)||(20287861-20287905)
chr7 (316-396)||(20300449-20300529)
[»] chr4 (3 HSPs)
chr4 (354-453)||(40825051-40825151)
chr4 (318-453)||(40820384-40820519)
chr4 (219-263)||(40825236-40825280)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 19937422 - 19937873
Alignment:
Q  12 atggaatgtgatgtttatggtgtatgtagaaattttgcatgttgaaatttacaaagctcaccaatatgtagttgtttgaaagggtttgagccaaagaacc 111  Q
    ||||||||||||||||||||||||||| || |||||||| | || |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||     
T  19937422 atggaatgtgatgtttatggtgtatgtggacattttgcaagctgtaattcacaaagctcaccaatatgtagctgtttgaaagggtttgagccaaggaaca 19937521  T
Q  112 aagaagaatggaataaacaaaattggactgaagggtgtgttaggaggacacctcttcaacaatgtgaaagatacagaaatcaaaacacaagtgaagacag 211  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  19937522 aagaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacag 19937621  T
Q  212 taaagctgatggttttttgaaactgcagatggtcaaagttcctgattttgcagatgggtcgtctctaacactttcatcggaagcatgcagaagccagtgt 311  Q
    ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| || || ||||| ||||| ||||| ||| |||||| ||| || |||    
T  19937622 taacgctgatggttttttgaaactgccgatggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaatgt 19937721  T
Q  312 ctagagaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggag 411  Q
    || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||    
T  19937722 ctggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggag 19937821  T
Q  412 gacttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19937822 gacttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 19937873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 19968561 - 19969012
Alignment:
Q  12 atggaatgtgatgtttatggtgtatgtagaaattttgcatgttgaaatttacaaagctcaccaatatgtagttgtttgaaagggtttgagccaaagaacc 111  Q
    ||||||||||||||||||||||||||| || |||||||| | || |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||     
T  19968561 atggaatgtgatgtttatggtgtatgtggacattttgcaagctgtaattcacaaagctcaccaatatgtagctgtttgaaagggtttgagccaaggaaca 19968660  T
Q  112 aagaagaatggaataaacaaaattggactgaagggtgtgttaggaggacacctcttcaacaatgtgaaagatacagaaatcaaaacacaagtgaagacag 211  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  19968661 aagaggaatggaataaacaaaattggaccgaaggatgtgttaggaggacacctcttcaacagtgcgaaagatacagaaatcaaaacacaagtgaagacag 19968760  T
Q  212 taaagctgatggttttttgaaactgcagatggtcaaagttcctgattttgcagatgggtcgtctctaacactttcatcggaagcatgcagaagccagtgt 311  Q
    ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| || || ||||| ||||| ||||| ||| |||||| ||| || |||    
T  19968761 taacgctgatggttttttgaaactgccgatggtcaaagttcccgattttgcagacggatcatctctcacactgtcatcagaaacatgcaaaagtcaatgt 19968860  T
Q  312 ctagagaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggag 411  Q
    || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||    
T  19968861 ctggagaattgctcttgtgttgcatattcttatgatgctgacattggttgtatgtcttggactgggaacctagttgacatacaaaaattctcaaatggag 19968960  T
Q  412 gacttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19968961 gacttgacttgtatattcgtgtagcacacacagaacttggtaaacattgtat 19969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 68 - 451
Target Start/End: Complemental strand, 47602182 - 47601796
Alignment:
Q  68 ctcaccaatatgtagttgtttgaaagggtttgagccaaagaaccaagaagaatggaataaacaaaattggactgaagggtgtgttaggaggacacctctt 167  Q
    ||||| ||||||||| | ||||||||||||||| |||| |||| ||||  ||||||||| |||||| |||||||  |||||||||||||||||||||||     
T  47602182 ctcactaatatgtagctatttgaaagggtttgaaccaaggaacaaagagaaatggaatagacaaaaatggactggtgggtgtgttaggaggacacctctg 47602083  T
Q  168 caacaatgtgaaagatacagaaatcaaaacacaagtgaagacagtaaagctgatggttttttgaaactgca---gatggtcaaagttcctgattttgcag 264  Q
    || || ||||||||||||||||||||||| | || || |||||||||||||||||||||||  ||||||||   ||||||||||||||||||||||||||    
T  47602082 cagcagtgtgaaagatacagaaatcaaaatataaatgtagacagtaaagctgatggtttttacaaactgcagtggatggtcaaagttcctgattttgcag 47601983  T
Q  265 atgggtcgtctctaacactttcatcggaagcatgcagaagccagtgtctagagaattgc--tcctgtgttgcatactcttatgatgctgacattggttgt 362  Q
    || |||||||||| ||||||||||| ||| |||||||||| || ||||| |||||||||  |  ||||||||||| ||||||||| ||||||||||||||    
T  47601982 atcggtcgtctctcacactttcatcagaaacatgcagaagtcactgtcttgagaattgctgttgtgtgttgcatattcttatgatcctgacattggttgt 47601883  T
Q  363 atgtcttggactggaaatctagtcgacatacaacaattctcaaatggaggacttgacttgtatattcgtgtagcacacacagaacttgg 451  Q
    ||||| |||||||| |||| ||| ||||||||||||||||||||||||||||  ||||| ||| | |||||||||||||||||||||||    
T  47601882 atgtcctggactgggaatcaagttgacatacaacaattctcaaatggaggac--gacttatatttccgtgtagcacacacagaacttgg 47601796  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 20230360 - 20230464
Alignment:
Q  315 gagaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggaggac 414  Q
    ||||||||||| |||||||| || ||| |||||| ||  ||||| |||||||||||||| || |||||| | |||||||||||||||  || ||||||||    
T  20230360 gagaattgctcttgtgttgcgtattctcatgatgatgggattggctgtatgtcttggaccggcaatctacttgacatacaacaattccaaagtggaggac 20230459  T
Q  415 ttgac 419  Q
    |||||    
T  20230460 ttgac 20230464  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 20262928 - 20263044
Alignment:
Q  315 gagaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggaggac 414  Q
    ||||||||||| |||||||| || ||| || ||| ||  ||||| ||||||||||||||  |||||||| | |||||||||||||||  || ||||||||    
T  20262928 gagaattgctcttgtgttgcgtattctcatcatgatgtgattggctgtatgtcttggacccgaaatctacttgacatacaacaattccaaagtggaggac 20263027  T
Q  415 ttgacttgtatattcgt 431  Q
    ||||| | |||||||||    
T  20263028 ttgacctatatattcgt 20263044  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 453
Target Start/End: Original strand, 20287990 - 20288089
Alignment:
Q  354 attggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggaggacttgacttgtatattcgtgtagcacacacagaacttggta 453  Q
    ||||||||||||||||||||||| |||||| | || ||||||||||||  ||||||||| ||||| || ||| ||||||||||  |  ||||||||||||    
T  20287990 attggttgtatgtcttggactgggaatctaattgatatacaacaattcaaaaatggagggcttgatttatatgttcgtgtagcctatgcagaacttggta 20288089  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 453
Target Start/End: Original strand, 20293322 - 20293457
Alignment:
Q  318 aattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggaggacttg 417  Q
    |||||||||||  |||| || ||| ||||| |||  ||||| |||||||||||||||||||||||| | |||||||| ||| ||  || ||||||||| |    
T  20293322 aattgctcctgcattgcgtattctcatgattctgggattggctgtatgtcttggactggaaatctacttgacatacatcaactccaaagtggaggactcg 20293421  T
Q  418 acttgtatattcgtgtagcacacacagaacttggta 453  Q
    |  | ||| ||||||||||  || ||||||||||||    
T  20293422 atctatatgttcgtgtagcctacgcagaacttggta 20293457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 20242308 - 20242414
Alignment:
Q  313 tagagaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggagg 412  Q
    ||||||||||||| |||||||| || ||| || ||| ||  ||||| |||||||||||||| || |||||| | |||||| ||||||||  || ||||||    
T  20242308 tagagaattgctcttgtgttgcgtattctcatcatgatgtgattggctgtatgtcttggaccggcaatctacttgacatagaacaattcgaaattggagg 20242407  T
Q  413 acttgac 419  Q
    |||||||    
T  20242408 acttgac 20242414  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 20293085 - 20293183
Alignment:
Q  66 agctcaccaatatgtagttgtttgaaagggtttgagccaaagaaccaagaagaatggaataaacaaaattggactgaagggtgtgttaggaggacacct 164  Q
    ||||||||||||||||| ||||||| ||| ||||  || |  |||  ||||||||||| |||||| |||||||| |  |||||||||||||||||||||    
T  20293085 agctcaccaatatgtagctgtttgagaggatttgtacccagaaacatagaagaatggagtaaacataattggaccggtgggtgtgttaggaggacacct 20293183  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 400
Target Start/End: Complemental strand, 20169426 - 20169341
Alignment:
Q  315 gagaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaatt 400  Q
    ||||||||||| ||  ||||||| ||| |||||| ||  |||||||||||||||||||| || ||||||   ||||||||||||||    
T  20169426 gagaattgctcttgccttgcatattctcatgatgatgggattggttgtatgtcttggaccggcaatctacgtgacatacaacaatt 20169341  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 20302431 - 20302477
Alignment:
Q  219 gatggttttttgaaactgcagatggtcaaagttcctgattttgcaga 265  Q
    ||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  20302431 gatgggtttttgaaattgcagatggttaaagttcccgattttgcaga 20302477  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 20006703 - 20006650
Alignment:
Q  348 gctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattc 401  Q
    ||||| ||||||||||||||||||| | |||||||| |||| || |||||||||    
T  20006703 gctgatattggttgtatgtcttggaatagaaatctaatcgatattcaacaattc 20006650  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 20006973 - 20006889
Alignment:
Q  72 ccaatatgtagttgtttgaaagggtttgagccaaagaaccaagaagaatggaataaacaaaattggactgaagggtgtgttagga 156  Q
    ||||| ||||| |||||| |||||||||| ||||  ||| |  |||| ||||||| ||||||||||||| | || ||||||||||    
T  20006973 ccaatttgtaggtgtttggaagggtttgaaccaagaaacaatcaagagtggaatagacaaaattggactaatggatgtgttagga 20006889  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 20063990 - 20063946
Alignment:
Q  219 gatggttttttgaaactgcagatggtcaaagttcctgattttgca 263  Q
    ||||| ||||||||| || ||||||| ||||||||||||||||||    
T  20063990 gatgggtttttgaaattgaagatggttaaagttcctgattttgca 20063946  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 20287861 - 20287905
Alignment:
Q  219 gatggttttttgaaactgcagatggtcaaagttcctgattttgca 263  Q
    ||||| ||||||||| || ||||||| ||||||||||||||||||    
T  20287861 gatggatttttgaaattgaagatggttaaagttcctgattttgca 20287905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 396
Target Start/End: Original strand, 20300449 - 20300529
Alignment:
Q  316 agaattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaac 396  Q
    |||||||||| || |||||  | ||| |||||||||  ||||||||||||||||||||| | |||||| | || |||||||    
T  20300449 agaattgctcatgcgttgcgaattctcatgatgctggaattggttgtatgtcttggactaggaatctaattgatatacaac 20300529  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 453
Target Start/End: Complemental strand, 40825151 - 40825051
Alignment:
Q  354 attggttgtatgtcttggactggaaatctagtcgacatacaac-aattctcaaatggaggacttgacttgtatattcgtgtagcacacacagaacttggt 452  Q
    ||||||||||||||||||||||| |||||| | || ||||||| |||||| |||||||||||||||  | ||| ||||||||||  |  |||||||||||    
T  40825151 attggttgtatgtcttggactggcaatctaattgatatacaacaaattctaaaatggaggacttgatctatatgttcgtgtagcctatgcagaacttggt 40825052  T
Q  453 a 453  Q
    |    
T  40825051 a 40825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 453
Target Start/End: Complemental strand, 40820519 - 40820384
Alignment:
Q  318 aattgctcctgtgttgcatactcttatgatgctgacattggttgtatgtcttggactggaaatctagtcgacatacaacaattctcaaatggaggacttg 417  Q
    ||||||||||| ||||| || ||| ||||| |||  ||||| ||||||||||||||||| |||||| | |||||||| ||| ||  || ||||||||| |    
T  40820519 aattgctcctgcgttgcgtattctcatgattctgggattggctgtatgtcttggactgggaatctacttgacatacatcaactccaaagtggaggactcg 40820420  T
Q  418 acttgtatattcgtgtagcacacacagaacttggta 453  Q
    |  | ||| ||||||||||   |||| |||||||||    
T  40820419 atctatatgttcgtgtagcctgcacaaaacttggta 40820384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 40825280 - 40825236
Alignment:
Q  219 gatggttttttgaaactgcagatggtcaaagttcctgattttgca 263  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||||    
T  40825280 gatgggtttttgaaattgcagatggttaaagttcctgattttgca 40825236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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