View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_17 (Length: 445)
Name: NF19782_low_17
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 2494932 - 2495357
Alignment:
| Q |
18 |
atagatctgatcatagtcatcctcaacgttttatatgatatttatttagacctaattccaactttttggtttcgaagatggaaaatgaggactcaactat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
2494932 |
atagatctgatcatagtcatcctcaacgttttatataatatttatttagacctaattccaactttttggttaggaagatggaaaatggggactcaactat |
2495031 |
T |
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| Q |
118 |
tgttgatcgacctaagcttaagagctggaaaatttctgctgatggtacgagtgttgaggataagagtggcgaagactcaggtgaagctgatagtaccaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2495032 |
tgttgatcgacctaagcttaagagctggaaaatttctgctgatggtacgagtgttgaggataagagtggcgaagactcaggtgaagctgatagtaccaac |
2495131 |
T |
|
| Q |
218 |
gaagaaaagtatcctcaaaattttgagttgaacgaggatttgttggttacaaacactgctgaacaaacaagtgactgtagtttgaagaaggaggatccca |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
2495132 |
gaagaaaattatcctcaaaattttgagttgaacgaggatttgttggttacaaacactgttgaacaaacaagtgactgtagtttgaagaaggaggatccga |
2495231 |
T |
|
| Q |
318 |
tgttcttatctgatcaagtggatggggatagtttggctaacgatgaacctgcaaaagtggaattggttggcatggaaactatggatacggaattcgcacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
2495232 |
tgttcttatctgatcaagtggatggggatagtttggctaacgatgaacctgcaaaagtggaattggttggcatggaaactatggatacagaattggcacc |
2495331 |
T |
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| Q |
418 |
tgaggactgtagattgaaaaaggatg |
443 |
Q |
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||| |||||||||||||||||||||| |
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| T |
2495332 |
tgaagactgtagattgaaaaaggatg |
2495357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 45 - 441
Target Start/End: Original strand, 2511059 - 2511449
Alignment:
| Q |
45 |
gttttatatgatatttatttagacctaattccaactttttggtttcgaagatggaaaatgaggactcaactattgttgatcgacctaagcttaagagctg |
144 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||||| ||||| |||| |
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| T |
2511059 |
gttttatttgatatttatttagatctaattccaactttttggtttggaagatgaaaaatggggactcaactattgttgatcggcctaagtttaagcgctg |
2511158 |
T |
|
| Q |
145 |
gaaaatttctgctgatggtacgagtgttgaggataagagtggcgaagactcaggtgaagctgatagtaccaatgaagaaaagtatcctcaaaattttgag |
244 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||| ||||| |||| |||||||||||||||||| |||||| | |
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| T |
2511159 |
gaaaatttctgctgatggtacaagtgttggggataagagtggcaaagattcaggtgaagcttatagtcccaacgaagaaaagtatcctcaagattttggg |
2511258 |
T |
|
| Q |
245 |
ttgaacgaggatttgttggttacaaacactgctgaacaaacaagtgactgtagtttgaagaaggaggatcccatgttcttatctgatcaagtggatgggg |
344 |
Q |
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| T |
2511259 |
ttgaac---gatttgttggttacaaacactgttgaacaaacaagtgactgtacttt---gaaggaggatcccatggtcttatctgatatagtggatgggg |
2511352 |
T |
|
| Q |
345 |
atagtttggctaacgatgaacctgcaaaagtggaattggttggcatggaaactatggatacggaattcgcacctgaggactgtagattgaaaaagga |
441 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||| |||| ||||||| ||||| ||||| |
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| T |
2511353 |
ataatttggccaacgatgaacctgcaaaagtggaattggttggcatcgaatctatggatacagaatttgcaactgaagactgtaccttgaataagga |
2511449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 2511651 - 2511713
Alignment:
| Q |
349 |
tttggctaacgatgaacctgcaaaagtggaattggttggcatggaaactatggatacggaatt |
411 |
Q |
| |
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|||||| || ||||||||||||||| ||||||||| || ||||||||| ||||||||||||| |
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| T |
2511651 |
tttggcgaaagatgaacctgcaaaactggaattggcggggatggaaactttggatacggaatt |
2511713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 197 - 404
Target Start/End: Original strand, 4257458 - 4257665
Alignment:
| Q |
197 |
ggtgaagctgatagtaccaatgaagaaaagtatcctcaaaattttgagttgaacgaggatttgttggttacaaacactgctgaacaaacaagtgactgta |
296 |
Q |
| |
|
||||||||||||||| |||| || |||||| ||||||||| ||||||||| || || || || || ||| || |||||| |||||||||||||||||||| |
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| T |
4257458 |
ggtgaagctgatagtcccaacgatgaaaaggatcctcaaacttttgagttcaatgaagagttatttgttgcagacactgttgaacaaacaagtgactgta |
4257557 |
T |
|
| Q |
297 |
gtttgaagaaggaggatcccatgttcttatctgatcaagtggatggggatagtttggctaacgatgaacctgcaaaagtggaattggttggcatggaaac |
396 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||| ||| | ||| | |
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| T |
4257558 |
gtttgaagaaggaggatcctgtggtcttatctgatcaagtggatgtgggtagttttgccaacgatgaacctgcaaaagtggaattggtgggcgtagaagc |
4257657 |
T |
|
| Q |
397 |
tatggata |
404 |
Q |
| |
|
|||||||| |
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| T |
4257658 |
tatggata |
4257665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 441
Target Start/End: Original strand, 4257683 - 4257834
Alignment:
| Q |
290 |
gactgtagtttgaagaaggaggatcccatgttcttatctgatcaagtggatggggatagtttggctaacgatgaacctgcaaaagtggaattggttggca |
389 |
Q |
| |
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|||||||| ||||| ||||| ||||| || ||| |||| ||| |||||||||||||| ||||| |||||||||| || |||||||||||||||| |||| |
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| T |
4257683 |
gactgtagcttgaaaaaggaagatcctgtggtctcatctcatcgagtggatggggatattttggttaacgatgaagcttcaaaagtggaattggtgggca |
4257782 |
T |
|
| Q |
390 |
tggaaactatggatacggaattcgcacctgaggactgtagattgaaaaagga |
441 |
Q |
| |
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||||| || |||||| |||||| | | |||| |||||||| |||| |||||| |
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| T |
4257783 |
tggaagctgtggatatggaattggaaactgaagactgtagcttgagaaagga |
4257834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 4257302 - 4257362
Alignment:
| Q |
98 |
gaaaatgaggactcaactattgttgatcgacctaagcttaagagctggaaaatttctgctg |
158 |
Q |
| |
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||||||| ||||||||||||||||||| |||||| ||||| || ||||| ||||||||| |
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| T |
4257302 |
gaaaatggagactcaactattgttgatccgcctaagtttaagcgccggaaagtttctgctg |
4257362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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