View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_21 (Length: 416)
Name: NF19782_low_21
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 2624039 - 2624426
Alignment:
| Q |
18 |
cctctctgacatatcacgagtcctcagagaaaatagtcttgttattgtacgagcattcataaacttgttctctagtttagtcttttggagaaatttcatt |
117 |
Q |
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| T |
2624039 |
cctctctgacatatcacgagtcctcagagaaaatagtcttgttattgtacgagcattcataaacttgttctctagtttagtcttttggagaaatttcatt |
2624138 |
T |
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| Q |
118 |
ctcatggtctcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatcatcatagataacataatatatttgcatatat |
217 |
Q |
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| T |
2624139 |
ctcatggtctcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatcatcatagataacataatgtatttgcatatat |
2624238 |
T |
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| Q |
218 |
tgggagaatgggccatgaactatgttactattaaatttgcatatatcgatttattcaatatgtagcaaattcaagcatatggtttcttgacttagtccca |
317 |
Q |
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| T |
2624239 |
tgggagaatgggccatgaactatgttactattaaatttgcatatatcgatttattcaatatgtagcaaattcaagcatatggtttcttgacttagtccca |
2624338 |
T |
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| Q |
318 |
aaatccatatgcaattcatgaagtttcttccattgtaaagaattagtcagatggcgaagttgtccgtcacattttctctcatcttcat |
405 |
Q |
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| T |
2624339 |
aaatccatatacaattcatgaagttttttccattgtaaagaattagtcagatgacgaagttgaccgtcacattttctctcatcttcat |
2624426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 6186267 - 6186185
Alignment:
| Q |
127 |
tcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatcatcatagataacataatatattt |
209 |
Q |
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||||||||||||||||||||||||| |||||||| | |||||| | | ||| |||||||||| ||||||||||||||||| |
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| T |
6186267 |
tcaatcaatggacttagataaacatctatgtcgttacctggttgatatgggcccgaaatcatcatcgataacataatatattt |
6186185 |
T |
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