View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_22 (Length: 416)

Name: NF19782_low_22
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_22
NF19782_low_22
[»] chr5 (10 HSPs)
chr5 (15-401)||(38986873-38987260)
chr5 (15-252)||(39725745-39725982)
chr5 (37-266)||(39879125-39879360)
chr5 (37-266)||(40411830-40412065)
chr5 (122-266)||(1164332-1164476)
chr5 (61-233)||(1849323-1849495)
chr5 (128-232)||(3298832-3298936)
chr5 (131-232)||(3391725-3391826)
chr5 (146-209)||(39168281-39168340)
chr5 (302-355)||(39874044-39874097)
[»] chr4 (2 HSPs)
chr4 (139-251)||(25912944-25913058)
chr4 (15-98)||(25912815-25912898)
[»] chr3 (1 HSPs)
chr3 (212-256)||(55345733-55345777)


Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Complemental strand, 38987260 - 38986873
Alignment:
Q  15 actatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacat 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987260 actatgtcccctataagtgtcgcaaaataccaagcacaagatattatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacat 38987161  T
Q  115 catcaaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987160 catcaaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacg 38987061  T
Q  215 ccacccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccg-aactcactttttattctatctatttatttatttatgg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38987060 ccacccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccgaaactcactttttattctatctatttatttatttatgg 38986961  T
Q  314 tttagggccaaaattttcggttctaattgcgggtttggcccatcatactctttatttattttttgagatttacttttccactcctatg 401  Q
    ||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38986960 tttagggccaaaattctcagttctaatcgcgggtttggcccatcttactctttatttattttttgagatttacttttccactcctatg 38986873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 39725982 - 39725745
Alignment:
Q  15 actatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacat 114  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  39725982 actatttcccctataagtctcgcaaaatgccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattctctcaacac 39725883  T
Q  115 catcaaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacg 214  Q
     ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39725882 gatcaacgatagcaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacg 39725783  T
Q  215 ccacccttgctccatcttctccactttttgacctaatt 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39725782 ccacccttgctccatcttctccactttttgacctaatt 39725745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 266
Target Start/End: Complemental strand, 39879360 - 39879125
Alignment:
Q  37 caaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggt 136  Q
    |||||| ||||||| ||||||||| |  |||||||||||||||||||| ||||| ||||||| ||||| ||| | | | |  || | |||||| |||| |    
T  39879360 caaaatcccaagcataagatgttaaacggaaacagaaagaaaaaccttcatcaatgtcgtatttgattctcttagctttacgaacggtaccaaaattgtt 39879261  T
Q  137 cataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttc---acaacagaacg---ccacccttgctccatc 230  Q
    || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||   |||||||||||   |||||||| |||||||    
T  39879260 caaaacgctgatctgctccaaatgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatc 39879161  T
Q  231 ttctccactttttgacctaatttctttgcaattgca 266  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39879160 ttctccactctttgacctaatttctttgcaattgca 39879125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 266
Target Start/End: Complemental strand, 40412065 - 40411830
Alignment:
Q  37 caaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggt 136  Q
    |||||| ||||||| ||||||||| |  |||||||||||||||||||| ||||| ||||||| ||||| ||| | | | |  || | |||||| |||| |    
T  40412065 caaaatcccaagcataagatgttaaacggaaacagaaagaaaaaccttcatcaatgtcgtatttgattatcttagctttacgaacggtaccaaaattgtt 40411966  T
Q  137 cataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttc---acaacagaacg---ccacccttgctccatc 230  Q
    || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||   |||||||||||   |||||||| |||||||    
T  40411965 caaaacgctgatctgctccaaatgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatc 40411866  T
Q  231 ttctccactttttgacctaatttctttgcaattgca 266  Q
    ||||||||| ||||||||||||||||||||||||||    
T  40411865 ttctccactctttgacctaatttctttgcaattgca 40411830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 1164332 - 1164476
Alignment:
Q  122 gataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccaccct 221  Q
    ||||||||||| | ||  |||||||| ||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||||||||| |||||| |||    
T  1164332 gataccaagatggttccaaacgctgacctgctccaaatgaaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacgccatcct 1164431  T
Q  222 tgctccatcttctccactttttgacctaatttctttgcaattgca 266  Q
    | ||||||||||  |||||| ||||||||||| ||| ||||||||    
T  1164432 tcctccatcttcgacactttctgacctaatttttttccaattgca 1164476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 1849495 - 1849323
Alignment:
Q  61 tattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctccaaatg 160  Q
    |||||||||||||||| ||||||| ||| | || |||| ||||| ||  ||  |  ||||||||||| |||| | ||  |||||||| ||||||||||||    
T  1849495 tattgaaacagaaagacaaaccttcatcgatgttgtatttgattctccgaatcttttcaaggataccgagatggttcgaaacgctgacctgctccaaatg 1849396  T
Q  161 aaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttc 233  Q
    ||| | |||||| |||| ||||||||||||||||||||| |||||||||| ||   |||||| ||||||||||    
T  1849395 aaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacaaaacccttcctccatcttc 1849323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 3298936 - 3298832
Alignment:
Q  128 aagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctcc 227  Q
    ||||||||||  |||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| ||||  |  |||||||| ||||    
T  3298936 aagattggtccaaacgctgatctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctcc 3298837  T
Q  228 atctt 232  Q
    |||||    
T  3298836 atctt 3298832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 3391826 - 3391725
Alignment:
Q  131 attggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatc 230  Q
    |||||||  |||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| ||||  |  |||||||| |||||||    
T  3391826 attggtccaaacgctgatctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctccatc 3391727  T
Q  231 tt 232  Q
    ||    
T  3391726 tt 3391725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 39168340 - 39168281
Alignment:
Q  146 gatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaaca 209  Q
    |||||||||||||||||||| ||||    | ||||||||||||||||||||||| |||||||||    
T  39168340 gatctgctccaaatgaaagaaagta----gatgagaaacatgttgttgacgaaccttcacaaca 39168281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 39874097 - 39874044
Alignment:
Q  302 atttatttatggtttagggccaaaattttcggttctaattgcgggtttggccca 355  Q
    |||||||| | ||||||||||| ||||||| |||||||| ||||||||||||||    
T  39874097 atttatttgttgtttagggccagaattttcagttctaatcgcgggtttggccca 39874044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 25912944 - 25913058
Alignment:
Q  139 taacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgac--gaactttcacaacagaacgccacccttgctccatcttctcc 236  Q
    ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||  |||| ||||||||||| |||||||||| ||||||||||| |    
T  25912944 taacgctgatctgctccaaatgaaagaaagtacgcagttgacaaacatgttgttgacgagaacattcacaacagagcgccacccttcctccatcttcttc 25913043  T
Q  237 actttttgacctaat 251  Q
    | |||||||||||||    
T  25913044 attttttgacctaat 25913058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 25912815 - 25912898
Alignment:
Q  15 actatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtat 98  Q
    |||||||||||||||||| || |||||| ||| ||| |||||||| ||  ||||||||| |||||||||| ||||| |||||||    
T  25912815 actatgtcccctataagtttcacaaaatgccatgcaaaagatgttctacggaaacagaaggaaaaaccttcatcaatgtcgtat 25912898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 55345733 - 55345777
Alignment:
Q  212 acgccacccttgctccatcttctccactttttgacctaatttctt 256  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  55345733 acgccacccttcctccatattctccactctttgacctaatttctt 55345777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University