View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_23 (Length: 405)

Name: NF19782_low_23
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_23
NF19782_low_23
[»] chr4 (19 HSPs)
chr4 (18-404)||(51996887-51997274)
chr4 (5-259)||(51676660-51676914)
chr4 (118-259)||(5834020-5834162)
chr4 (64-172)||(40946306-40946414)
chr4 (66-238)||(55970013-55970183)
chr4 (164-248)||(6077734-6077818)
chr4 (18-79)||(5834163-5834225)
chr4 (191-253)||(37247399-37247461)
chr4 (186-236)||(40758021-40758070)
chr4 (165-259)||(43968543-43968638)
chr4 (172-259)||(1586306-1586393)
chr4 (164-259)||(37978133-37978228)
chr4 (160-259)||(38298389-38298488)
chr4 (203-257)||(35332197-35332251)
chr4 (192-261)||(2062213-2062282)
chr4 (144-237)||(8824842-8824934)
chr4 (210-259)||(45047334-45047383)
chr4 (144-237)||(52676632-52676725)
chr4 (191-259)||(36218929-36218997)
[»] chr7 (11 HSPs)
chr7 (5-259)||(5532798-5533049)
chr7 (18-174)||(36655601-36655757)
chr7 (18-127)||(22074221-22074331)
chr7 (162-253)||(47841575-47841666)
chr7 (121-257)||(38223831-38223967)
chr7 (44-259)||(30224151-30224367)
chr7 (144-236)||(19987037-19987128)
chr7 (186-260)||(42710677-42710750)
chr7 (99-166)||(33174175-33174241)
chr7 (145-257)||(17603981-17604091)
chr7 (167-231)||(30833824-30833888)
[»] chr5 (14 HSPs)
chr5 (4-229)||(5495650-5495876)
chr5 (18-185)||(13906011-13906179)
chr5 (173-259)||(41521034-41521119)
chr5 (43-175)||(2552355-2552488)
chr5 (186-259)||(8433937-8434010)
chr5 (142-253)||(15635750-15635861)
chr5 (162-259)||(606581-606678)
chr5 (201-253)||(39145037-39145089)
chr5 (159-249)||(13542382-13542471)
chr5 (210-259)||(3727009-3727058)
chr5 (203-259)||(9784807-9784863)
chr5 (162-257)||(30471601-30471696)
chr5 (203-260)||(19495219-19495276)
chr5 (191-252)||(33494939-33495000)
[»] chr2 (11 HSPs)
chr2 (18-259)||(7772844-7773086)
chr2 (18-259)||(4062624-4062863)
chr2 (64-177)||(43302183-43302296)
chr2 (43-149)||(448885-448992)
chr2 (99-250)||(11512040-11512191)
chr2 (128-257)||(37347978-37348105)
chr2 (208-252)||(448677-448721)
chr2 (164-253)||(12392189-12392278)
chr2 (144-238)||(9707430-9707523)
chr2 (203-244)||(449270-449311)
chr2 (203-259)||(5552571-5552627)
[»] chr8 (16 HSPs)
chr8 (68-259)||(30905618-30905809)
chr8 (44-258)||(44103981-44104195)
chr8 (63-157)||(24845698-24845792)
chr8 (165-260)||(6106955-6107050)
chr8 (203-259)||(38937646-38937702)
chr8 (167-253)||(8644266-8644353)
chr8 (171-255)||(13629183-13629267)
chr8 (171-255)||(13729595-13729679)
chr8 (203-259)||(17793106-17793162)
chr8 (203-238)||(5978729-5978764)
chr8 (199-260)||(5536003-5536064)
chr8 (193-238)||(7206853-7206898)
chr8 (190-259)||(8699099-8699168)
chr8 (165-237)||(18806743-18806815)
chr8 (163-255)||(28540529-28540621)
chr8 (144-228)||(36597160-36597242)
[»] chr6 (4 HSPs)
chr6 (64-177)||(378847-378960)
chr6 (192-259)||(6794113-6794180)
chr6 (162-257)||(11703335-11703430)
chr6 (191-259)||(29383840-29383908)
[»] chr3 (14 HSPs)
chr3 (63-174)||(52120079-52120189)
chr3 (99-257)||(17378672-17378829)
chr3 (144-259)||(31153539-31153654)
chr3 (163-259)||(53143386-53143481)
chr3 (129-259)||(48457764-48457894)
chr3 (99-259)||(50345791-50345949)
chr3 (164-259)||(3432746-3432841)
chr3 (165-259)||(7932530-7932624)
chr3 (185-259)||(14477078-14477152)
chr3 (99-185)||(40485206-40485292)
chr3 (206-259)||(22909214-22909267)
chr3 (162-259)||(30595234-30595331)
chr3 (203-259)||(7885801-7885857)
chr3 (200-260)||(45707481-45707541)
[»] chr1 (10 HSPs)
chr1 (99-228)||(42400883-42401012)
chr1 (64-177)||(15457161-15457279)
chr1 (164-259)||(30335918-30336013)
chr1 (121-260)||(33259577-33259715)
chr1 (121-260)||(33279736-33279874)
chr1 (203-259)||(7789575-7789631)
chr1 (124-228)||(5827409-5827511)
chr1 (190-259)||(19512734-19512803)
chr1 (166-238)||(24555942-24556014)
chr1 (191-259)||(50270575-50270643)
[»] scaffold0067 (1 HSPs)
scaffold0067 (161-257)||(125-222)
[»] scaffold0578 (1 HSPs)
scaffold0578 (190-259)||(10135-10204)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 51997274 - 51996887
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaa 116  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51997274 aacaaaaggtctaaataggacccaccaataacattaaaaaaccaaggtaaattgcaattgaaaagcaatagtacaatgacattgattattttaagcaaaa 51997175  T
Q  117 gtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtac 216  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51997174 gtaatgtggggcccacttaagcattgaggtcttaagtgagaccttgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtat 51997075  T
Q  217 caggtcttaaatagttaagaccataccattgtggatggtctaactcgtcatatattggtagactattgctaatatttgtatggacagtaattgattttcc 316  Q
      | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51997074 tggatcttaaatagttaagaccctaccattgtggatggtctaactcgtcatatattggtagactattgctaatatttgtatggacagtaattgattttcc 51996975  T
Q  317 agcatttggaatatcatgagtaatttgttcaaagatttgagaacaccattgcatacatcttattaccaagtttatatctttgtgatat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51996974 agcatttggaatatcatgagtaatttgttcaaagatttgagaacaccattgcatacatcttattaccaagtttatatctttgtgatat 51996887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 51676914 - 51676660
Alignment:
Q  5 atggacatcatcaaacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgatt 103  Q
    ||||| ||| || |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  51676914 atggagatcctccaacaaaaggtctaaataagacccaccaataa-attaaaaaaccaaggtaaattgcaattgaaaagcaataatacaatgacattgatt 51676816  T
Q  104 attttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggat 203  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | | |||  |||||||||||||||||| ||||||||||||||||||||||| |    
T  51676815 attttaagcgaaagtaatgtggggcccacttaagcattgaggtcttaactaagactctgggtcttagaagacccgcaaaaaatttctccacaataggggt 51676716  T
Q  204 acctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||| ||||| | |||||||||||||| ||| ||| ||||||||||||||||    
T  51676715 acctattaagtaccggatcttaaatagttaaaaccctactattgtggatggtctaa 51676660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 259
Target Start/End: Complemental strand, 5834162 - 5834020
Alignment:
Q  118 taatgtggggcccacttaagcattgaggtcttgagtgagatcct-gggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtac 216  Q
    |||||| || |||| ||||||||||| ||||| ||||||  | | ||||||| ||||| ||| |||||||||||||||||| | | ||||||||||||||    
T  5834162 taatgttggacccatttaagcattgaagtcttaagtgagtgctttgggtcttggaagatccctaaaaaatttctccacaatggaggtacctattaggtac 5834063  T
Q  217 caggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    | |||||||||||||||| ||| ||||||||||||||||||||    
T  5834062 cgggtcttaaatagttaaaaccctaccattgtggatggtctaa 5834020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 40946306 - 40946414
Alignment:
Q  64 taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgg 163  Q
    ||||||||| |||||||||||| ||| ||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||     
T  40946306 taaattgcaattgaaaagcaattgtagaatgacaattattattttaagaaaaagtaatgtggggtccacttaagcattgaggtcttaagtgagaccctga 40946405  T
Q  164 gtcttagaa 172  Q
    ||| |||||    
T  40946406 gtcctagaa 40946414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 55970183 - 55970013
Alignment:
Q  66 aattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaat--gtggggcccacttaagcattgaggtcttgagtgagatcctgg 163  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||| ||| |||||  | |||| |||||||| ||||||| |||| ||||||||||| |    
T  55970183 aattgcaattgaaaaacaatagtacaatgacaatgattattttaagaaaatgtaatgcgcggggtccacttaaacattgagttcttaagtgagatcctag 55970084  T
Q  164 gtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagacc 238  Q
    ||| ||||||||||  ||||||| | |||||| |   || || |||||||||||||||||||||| || ||||||    
T  55970083 gtcatagaagaccctaaaaaaatat-tccacatt---gacacttattaggtaccaggtcttaaatggtgaagacc 55970013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 6077734 - 6077818
Alignment:
Q  164 gtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgt 248  Q
    |||||||||||||||||||||| || |||||||| |   |||||||||||||| ||||||||||| || ||||||  ||||||||    
T  6077734 gtcttagaagacccccaaaaaaattttccacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattgt 6077818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 5834225 - 5834163
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaa-gtaaattgcagttgaaa 79  Q
    ||||| |||| |||||| |||||| |||||||||||||||||||| |||||||||| ||||||    
T  5834225 aacaataggtttaaataggacccaccaataacattaaaaaaccaaggtaaattgcaattgaaa 5834163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 37247399 - 37247461
Alignment:
Q  191 ccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatg 253  Q
    |||||||| || ||||||||||||||||| |||||||| || ||||||  |||||||||||||    
T  37247399 ccacaataagggtacctattaggtaccagatcttaaatggtgaagacctcaccattgtggatg 37247461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 40758021 - 40758070
Alignment:
Q  186 tttctccacaatagggatacctattaggtaccaggtcttaaatagttaaga 236  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  40758021 tttctccacaatgggg-tacctattaggtaccaggtcttaaatatttaaga 40758070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 43968543 - 43968638
Alignment:
Q  165 tcttagaagacccccaaaaaa--tttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||||||||||  |||| ||| ||| ||  |||||||||||||| |||||||||||| | ||||||  |||||||| |||| |||||    
T  43968543 tcttagaagacccccaaaaaaaatttc-ccataatgggagtacctattaggtactaggtcttaaataatgaagacctcaccattgtagatgctctaa 43968638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 1586393 - 1586306
Alignment:
Q  172 agacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||||| | |||  ||||||| | | |||||| |||||||| | |||||||| |||||||||  ||||||||||||| |||||    
T  1586393 agacccccaaatatttttcccacaatggaggtacctaataggtaccggatcttaaatggttaagacctcaccattgtggatgatctaa 1586306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 37978133 - 37978228
Alignment:
Q  164 gtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||||||| |||||||||||  ||||||| |   |||||||||||||| | ||||||||| || |||||   |||||||| |||| |||||    
T  37978133 gtcttagaagacctccaaaaaattttcccacaatggaagtacctattaggtactaagtcttaaatggtgaagacttcaccattgtagatgctctaa 37978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 38298488 - 38298389
Alignment:
Q  160 ctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||| |||||||||||||||||    |||  |||||||||  |||||||||| |||| || |||||||| || ||||||  ||||||||||||| |||||    
T  38298488 ctggatcttagaagacccccaattttttttcccacaatagaaatacctattaagtactagatcttaaatggtgaagacctcaccattgtggatgctctaa 38298389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 35332197 - 35332251
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtct 257  Q
    |||||| |||||||| |||||||||||||||||||| | ||||||  ||||||||    
T  35332197 tacctaataggtaccgggtcttaaatagttaagaccctcccattggagatggtct 35332251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 2062282 - 2062213
Alignment:
Q  192 cacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaact 261  Q
    |||||| ||||||||||||| ||||||| |||||||| || ||||||  |||||||| |||  |||||||    
T  2062282 cacaatggggatacctattaagtaccagatcttaaatggtgaagacctcaccattgtagatactctaact 2062213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 8824934 - 8824842
Alignment:
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagac 237  Q
    |||||| ||| |||||| || ||||| |||||||  |||||||| |||| || | | |||||||| |||||||| | |||||||||||||||||    
T  8824934 ggtcttaagtaagatcccggatcttataagaccctgaaaaaatt-ctcctcactggagatacctaataggtaccggatcttaaatagttaagac 8824842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 45047334 - 45047383
Alignment:
Q  210 taggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||| | |||||||| |||||||||  |||||||||||||||||||    
T  45047334 taggtaccggatcttaaatggttaagacctcaccattgtggatggtctaa 45047383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 52676632 - 52676725
Alignment:
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagac 237  Q
    |||||| ||| ||| ||||||||||| |||||||||||||||    |||||||| |   ||||||||| |||| ||||||||||| || |||||    
T  52676632 ggtcttaagttagaccctgggtcttataagacccccaaaaaaaaattccacaatggaagtacctattacgtactaggtcttaaatggtgaagac 52676725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 36218997 - 36218929
Alignment:
Q  191 ccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||| ||||| |||||||||||||||   |||||||| || |||||| ||||| |||||||| |||||    
T  36218997 ccacattaggggtacctattaggtaccgaatcttaaatggtaaagaccctaccaatgtggatgctctaa 36218929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 5532798 - 5533049
Alignment:
Q  5 atggacatcatcaaacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgatt 103  Q
    ||||| ||| || ||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||    
T  5532798 atggagatcctccaacaaaaggtctaaataggacccaccaataacattaaaaaatcaaggtaaattgcaattgaaaagcaatagtacaatgacattgatt 5532897  T
Q  104 attttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggat 203  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||| ||    |||||||||||| |||||||| || |||||||| | | |    
T  5532898 attttaagcaaaagtaatgtggagtccacttaagcattgatgtcttaagtgagaccc----tcttagaagacctccaaaaaaattatccacaatggaggt 5532993  T
Q  204 acctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||| |||| | ||||||||| |||||||  ||||||||| ||||||||||    
T  5532994 acctattagataccggatcttaaataattaagactctaccattgtagatggtctaa 5533049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 36655757 - 36655601
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaa 116  Q
    ||||||| ||||||||| |||||| |||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  36655757 aacaaaatgtctaaataggacccaccaataacattaaaaaatcaaggtaaattacaattgaaaagcaatagtacaatgacattgattattttaatcaaaa 36655658  T
Q  117 gtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaaga 174  Q
    |||||||||   ||||||||||| ||||||||| |||||||  |||| ||||| ||||    
T  36655657 gtaatgtggaatccacttaagca-tgaggtcttaagtgagactctggatcttaaaaga 36655601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 22074331 - 22074221
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaa 116  Q
    ||||||||||||| ||  | |||| ||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  22074331 aacaaaaggtctatatgggtcccaccaataacattaaaaagccaaggtaaattgcaattaaaaagcaatagtacaatgacaatgattattttaagcaaaa 22074232  T
Q  117 gtaatgtgggg 127  Q
    |||||||||||    
T  22074231 gtaatgtgggg 22074221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 47841575 - 47841666
Alignment:
Q  162 gggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatg 253  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||| | |||||||||||||||||| ||||||||||||||    
T  47841575 gggtcttataagacccctaaaaaatttctccacaatggggctacctattagataccggatcttaaatagttaagaccgtaccattgtggatg 47841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 38223967 - 38223831
Alignment:
Q  121 tgtggggcccacttaagcattgag-gtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccag 219  Q
    |||||| |||||||||| |||||| ||||| |||||||  |||||||||| |||||||||||||| ||| ||||||||     |||| ||||||||||||    
T  38223967 tgtgggtcccacttaag-attgagagtcttaagtgagactctgggtcttataagacccccaaaaattttgtccacaatgaaagtaccaattaggtaccag 38223869  T
Q  220 gtcttaaatagttaagaccataccattgtggatggtct 257  Q
     ||||||||||||||||||  |||||||||||| ||||    
T  38223868 atcttaaatagttaagaccccaccattgtggatcgtct 38223831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 259
Target Start/End: Complemental strand, 30224367 - 30224151
Alignment:
Q  44 aataacattaaaaaa--ccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcat 140  Q
    |||||||||||||||  ||||| ||||||  | ||||||||||||| |||||| | | ||||||||||||| |||||||| ||| || | ||||| ||||    
T  30224367 aataacattaaaaaaagccaaggtaaattataattgaaaagcaataatacaataaaaatgattattttaagaaaaagtaacgtgaggtcaactta-gcat 30224269  T
Q  141 tgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccat 240  Q
    ||| ||||| ||| ||| | | |||||||  |||||| ||||  |||| || ||| |||||||||||||||  || | |||||||||| ||||||| | |    
T  30224268 tgaagtcttaagtaagaccttaggtcttaagagaccctcaaattatttttc-acattagggatacctattaaatatcgggtcttaaatggttaagagctt 30224170  T
Q  241 accattgtggatggtctaa 259  Q
    |||| | ||||||||||||    
T  30224169 accaatatggatggtctaa 30224151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 19987128 - 19987037
Alignment:
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaaga 236  Q
    |||||| ||||||| | ||||||||| | |||||||||||| |||||||||||  ||| |||||| ||||||| |||||||||||||||||||    
T  19987128 ggtcttaagtgagaccttgggtcttataggacccccaaaaa-tttctccacaacgggggtacctaataggtactaggtcttaaatagttaaga 19987037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 42710677 - 42710750
Alignment:
Q  186 tttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    |||| ||||||| ||| |||||| ||||||||||||||||||| ||||| | |  ||||||||||||||||||||    
T  42710677 tttccccacaatgggg-tacctaataggtaccaggtcttaaatggttaaaatctcaccattgtggatggtctaac 42710750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 33174175 - 33174241
Alignment:
Q  99 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtc 166  Q
    ||||||||||||| ||||||| ||||||||||||||||| | ||| ||||| ||||||| ||| ||||    
T  33174175 tgattattttaagaaaaagtattgtggggcccacttaag-aatgatgtcttaagtgagaccctaggtc 33174241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 17603981 - 17604091
Alignment:
Q  145 gtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccatacca 244  Q
    ||||| ||||||| || ||||||||  |||||||||||   |||| ||||||| | | ||||||||||| |||   |||||||| |||||||||  ||||    
T  17603981 gtcttaagtgagaccc-gggtcttaagagacccccaaattttttc-ccacaatggaggtacctattaggcaccgaatcttaaatggttaagacctcacca 17604078  T
Q  245 ttgtggatggtct 257  Q
    |||||||||||||    
T  17604079 ttgtggatggtct 17604091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 30833824 - 30833888
Alignment:
Q  167 ttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagt 231  Q
    ||||||||||||||||   |||  ||||||| || ||||||||||| ||| ||||||||||||||    
T  30833824 ttagaagacccccaaatttttttcccacaatgggaatacctattagatactaggtcttaaatagt 30833888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 5495650 - 5495876
Alignment:
Q  4 gatggacatcatcaaacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgat 102  Q
    |||||| ||| || |||||||| |||||||| |||||| ||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||    
T  5495650 gatggatatcttccaacaaaagatctaaataggacccaccaataacattaaaaaacaaaggtaaattgcaattgaaaaacaatagtacaatgacattgat 5495749  T
Q  103 tattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaataggga 202  Q
    |||||||| |||||||||||||||  ||||||||||||| ||||||| | |||||  |||||||||||||||||||||||||||||||| ||||| | |     
T  5495750 tattttaaacaaaagtaatgtgggatccacttaagcattaaggtcttaattgagactctgggtcttagaagacccccaaaaaatttctcaacaatcgagg 5495849  T
Q  203 tacctattaggtaccaggtcttaaata 229  Q
    ||| ||||||||||| |||||||||||    
T  5495850 tacgtattaggtaccgggtcttaaata 5495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 13906011 - 13906179
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaa 116  Q
    ||||||||||||||||| |||||| || ||| ||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  13906011 aacaaaaggtctaaataggacccaccagtaaaattaaaaaatcaaggtaaattgcaattgaaaaacaatagtacaatgacattgattattttaagcaaaa 13906110  T
Q  117 gtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaa 185  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| || |||| |||||||||| ||||||    
T  13906111 gtaatgtggggtccacttaagcattgaggtcttaagtgagatcatgagtctcagaagaccccaaaaaaa 13906179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 41521034 - 41521119
Alignment:
Q  173 gacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||||||| |||||||||||  |  ||||||||||||||  |||||||||| ||||||||| |||||| |||||||||||||    
T  41521034 gacccccaaaaaaattctccacaatgagagtacctattaggtacg-ggtcttaaatggttaagaccctaccatagtggatggtctaa 41521119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 2552488 - 2552355
Alignment:
Q  43 caataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcatt 141  Q
    |||||||||||||||| |||| |||||||   |||| || |||||||||||| ||| |||||||||||| |||||||||| |||||  ||||| | ||||    
T  2552488 caataacattaaaaaatcaaggtaaattgtcattgataaacaatagtacaatcacaatgattattttaaacaaaagtaatttggggttcactttaacatt 2552389  T
Q  142 gaggtcttgagtgagatcctgggtcttagaagac 175  Q
    ||| |||| | ||||| || | ||| ||||||||    
T  2552388 gagatcttaaatgagacccggtgtcctagaagac 2552355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 8433937 - 8434010
Alignment:
Q  186 tttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||| ||||||| ||| |||||||||||||||||||||||||| || ||||||  ||||||||||||| |||||    
T  8433937 tttccccacaatgggggtacctattaggtaccaggtcttaaatggtgaagacctcaccattgtggatgctctaa 8434010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 15635750 - 15635861
Alignment:
Q  142 gaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccata 241  Q
    |||||||| ||| ||| ||| ||||||||||||||| | | |  |||| ||||||| ||  |||||||||||||| ||||||||||| || ||||||  |    
T  15635750 gaggtcttaagttagaccctaggtcttagaagacccacgagatttttccccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctca 15635849  T
Q  242 ccattgtggatg 253  Q
    ||||||||||||    
T  15635850 ccattgtggatg 15635861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 606581 - 606678
Alignment:
Q  162 gggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||||| ||||   |||| ||||||| ||  || ||||||||||| ||||||||||| || ||||||  ||||||||||||| |||||    
T  606581 gggtcttagaagaccctcaaattttttccccacaatgggagtatctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctctaa 606678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 39145089 - 39145037
Alignment:
Q  201 gatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatg 253  Q
    ||||| |||||||||||| ||||||||||||||||||||||  ||||||||||    
T  39145089 gatacatattaggtaccatgtcttaaatagttaagaccatatgattgtggatg 39145037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 13542382 - 13542471
Alignment:
Q  159 cctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtg 249  Q
    |||||||||||||||||||||||    |||| ||||||| ||  |||||||||||||| ||||||||||| || ||||||  |||||||||    
T  13542382 cctgggtcttagaagacccccaatttttttc-ccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtg 13542471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 3727058 - 3727009
Alignment:
Q  210 taggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||||||||||||||||||||| | || |||||| ||||||||||    
T  3727058 taggtaccaggtcttaaatagttaagatcctatcattgtagatggtctaa 3727009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 9784807 - 9784863
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||| ||||||||||| || ||||||  ||||||||||||| |||||    
T  9784807 tacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctctaa 9784863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 30471696 - 30471601
Alignment:
Q  162 gggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtct 257  Q
    ||||||||  ||||||||||| | |||  ||||||| | | |||||| |||||||| | |||||||| |||||||||  |||||||||| ||||||    
T  30471696 gggtcttaagagacccccaaatatttttcccacaatggaggtacctaataggtaccggatcttaaattgttaagacctcaccattgtggttggtct 30471601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 19495219 - 19495276
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    |||||||||||||| ||||||||||| || ||||||  |||||||| |||| ||||||    
T  19495219 tacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctctaac 19495276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 33494939 - 33495000
Alignment:
Q  191 ccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggat 252  Q
    ||||||| ||| |||||| |||||| | |||||||||| |||||||||  ||||||||||||    
T  33494939 ccacaatgggggtacctaataggtatcgggtcttaaatggttaagacctcaccattgtggat 33495000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 7772844 - 7773086
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaa 116  Q
    ||||||||||||| ||  | ||||  |||||||||||||||||||| |||||| || ||||||| ||||||||||||  |||||||||||||||||||||    
T  7772844 aacaaaaggtctatatgggtcccaagaataacattaaaaaaccaagataaattacaattgaaaaacaatagtacaatatcattgattattttaagcaaaa 7772943  T
Q  117 gtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtac 216  Q
    ||||||||||| || |||||||||||||||||| | ||||| ||||| |||| ||||||||| |||||||||||| ||||||   ||||||||||| ||     
T  7772944 gtaatgtggggtccgcttaagcattgaggtcttaaatgagaccctggatctttgaagaccccaaaaaaatttctctacaataaaaatacctattagatat 7773043  T
Q  217 caggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||| |||||||||||||||| ||||||||||| ||||||||||    
T  7773044 cagatcttaaatagttaagatcataccattgttgatggtctaa 7773086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 4062624 - 4062863
Alignment:
Q  18 aacaaaaggtctaaataagacccatcaataacattaaaaaaccaag-taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaa 116  Q
    ||||||||||||| ||  | |||| |||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||||||||||||||| ||||| | |    
T  4062624 aacaaaaggtctatatgggtcccaccaataacattaaaaaatcaagataaattgcaattgaaaaacaata-tacaatgacattgattattctaagcgaga 4062722  T
Q  117 gtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtac 216  Q
     |||||||||| ||||||||| ||||| ||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| | || ||||||||||||     
T  4062723 ataatgtggggtccacttaagtattgaagtcttaagtgagatcccgggtcttagaagacccctaaaaaatttctctacaatggaga-acctattaggta- 4062820  T
Q  217 caggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||    
T  4062821 caggttttaaatagttaaaaccttaccattgtggatggtctaa 4062863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 43302296 - 43302183
Alignment:
Q  64 taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgg 163  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||| ||| || ||||| |||||||  ||||    
T  43302296 taaattgcaattgaaaaacaatagtccaatgacaatgattattttaagaaaaagtaatgtggggtccacttaaacatcgatgtcttaagtgagactctgg 43302197  T
Q  164 gtcttagaagaccc 177  Q
    ||||||||||||||    
T  43302196 gtcttagaagaccc 43302183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 448885 - 448992
Alignment:
Q  43 caataacattaaaaaaccaa-gtaaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcatt 141  Q
    |||||||||||||||  ||| ||||||| || |||||||||||  ||||||||||| ||||||||||||  |||||||||||| || |||||||| ||||    
T  448885 caataacattaaaaagtcaaagtaaatttcaattgaaaagcaacggtacaatgacaatgattattttaattaaaagtaatgtgaggtccacttaaacatt 448984  T
Q  142 gaggtctt 149  Q
    ||||||||    
T  448985 gaggtctt 448992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 11512040 - 11512191
Alignment:
Q  99 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaata 198  Q
    |||||||||||   ||||||  ||||||| |||||||||  | | |||||| ||| ||| |||||||||||  ||||||||||||  ||| |||||| |     
T  11512040 tgattattttattgaaaagtggtgtggggtccacttaagattgggggtcttaagttagaccctgggtcttaagagacccccaaaatttttttccacattg 11512139  T
Q  199 gggatacctattaggtaccaggtcttaaatagttaagaccataccattgtgg 250  Q
    ||| ||||||||||||||| |||||||||| || |||||| ||||| |||||    
T  11512140 ggggtacctattaggtaccgggtcttaaatggtaaagaccctaccaatgtgg 11512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 37347978 - 37348105
Alignment:
Q  128 cccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaa 227  Q
    |||||||||| ||||||||||| | | ||| ||||  ||||| |||| |||||||| |||||||||||||   | |||||||||| ||||   | |||||    
T  37347978 cccacttaag-attgaggtcttaaattagaccctgaatcttataagatccccaaaacatttctccacaatgaaggtacctattagataccgaattttaaa 37348076  T
Q  228 tagttaagaccataccattgtggatggtct 257  Q
    ||||||||||| |||||||| |||||||||    
T  37348077 tagttaagacc-taccattgcggatggtct 37348105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 448677 - 448721
Alignment:
Q  208 attaggtaccaggtcttaaatagttaagaccataccattgtggat 252  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  448677 attaggtaccgggtcttaaatagttaagaccctaccattgtggat 448721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 12392189 - 12392278
Alignment:
Q  164 gtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatg 253  Q
    |||||||||||| ||||||   |||| ||||||||||  |||||||||||||| ||||||||||| |  ||||||  |||||| ||||||    
T  12392189 gtcttagaagactcccaaattttttccccacaataggagtacctattaggtactaggtcttaaatggggaagacctcaccattatggatg 12392278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 9707430 - 9707523
Alignment:
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagacc 238  Q
    |||||| ||| ||| ||||| ||||||||||||||||||   || | ||||||| ||  |||||||||||||| ||||||||||| || ||||||    
T  9707430 ggtcttaagttagaccctggatcttagaagacccccaaatt-ttcccccacaatgggagtacctattaggtactaggtcttaaatggtgaagacc 9707523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 449270 - 449311
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccatacca 244  Q
    |||||||||||||||||||||||||| || |||||| |||||    
T  449270 tacctattaggtaccaggtcttaaatggtgaagaccttacca 449311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 5552571 - 5552627
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||| ||||||||||| || ||||||  |||||||| |||| |||||    
T  5552571 tacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctctaa 5552627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 68 - 259
Target Start/End: Original strand, 30905618 - 30905809
Alignment:
Q  68 ttgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtct 167  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||   |||||||    
T  30905618 ttgcaattgaaaaacaatagtacaatgacattgatcattttaagcaaaagtaatgtgaggtccacttaagcattgaggtcttaagtgagacattgggtct 30905717  T
Q  168 tagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    || |||||| ||||||||||||| |||||| ||| ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||    
T  30905718 taaaagacctccaaaaaatttcttcacaatgggggtacctattaggtatcagctcttaaatagttaagaccctaccattatggatggtctaa 30905809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 44 - 258
Target Start/End: Complemental strand, 44104195 - 44103981
Alignment:
Q  44 aataacattaaaaaaccaagtaaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattga 143  Q
    ||||||||||||||  || |||||||||| ||||||| |||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  44104195 aataacattaaaaagtcaggtaaattgcaattgaaaaacaatagtagaatgacattaattattttaaacaaaagtaatgtggggtccacttaagcattga 44104096  T
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccatacc 243  Q
    |||||| |||||||   |||||| ||||||||||  ||||||    | |||| | ||| |||||||||||||||| ||||||||| || ||||||  |||    
T  44104095 ggtcttaagtgagactatgggtcctagaagaccctaaaaaaaaaaattcacattgggggtacctattaggtaccaagtcttaaatggtgaagacctcacc 44103996  T
Q  244 attgtggatggtcta 258  Q
    | |||||||| ||||    
T  44103995 aatgtggatgctcta 44103981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 24845792 - 24845698
Alignment:
Q  63 gtaaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgaga 157  Q
    ||||||| || ||||||| |||||||||||| | | ||||||||||||| ||||||||||| ||| ||| ||||||||||||||||| |||||||    
T  24845792 gtaaattacaattgaaaaacaatagtacaataaaaatgattattttaagaaaaagtaatgtagggtccatttaagcattgaggtcttaagtgaga 24845698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 6107050 - 6106955
Alignment:
Q  165 tcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    |||||||||| ||||||||||| | |||||||| ||  |||||||||||||| ||||||||||| || ||||||  |||||||| |||| ||||||    
T  6107050 tcttagaagatccccaaaaaatatttccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctctaac 6106955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 38937702 - 38937646
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||| |||||  ||||||||||||||||||| ||||||||| ||||||||||    
T  38937702 tacctattaagtaccgagtcttaaatagttaagaccctaccattgtagatggtctaa 38937646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 8644353 - 8644266
Alignment:
Q  167 ttagaagacccccaaaaaatttctcc-acaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatg 253  Q
    ||||||||||||||||||| || ||| ||||| ||  |||||||||||||| ||||||||||| || ||||||  |||||||| ||||    
T  8644353 ttagaagacccccaaaaaaattttcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatg 8644266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 13629183 - 13629267
Alignment:
Q  171 aagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggt 255  Q
    |||||| ||| |||||||||||||||||||  |||||||||| || |   | ||||||||| |||||| |||||| |||||||||    
T  13629183 aagaccaccagaaaatttctccacaataggtgtacctattagatatcgaattttaaatagtaaagaccctaccatcgtggatggt 13629267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 13729595 - 13729679
Alignment:
Q  171 aagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggt 255  Q
    |||||| ||| |||||||||||||||||||  |||||||||| || |   | ||||||||| |||||| |||||| |||||||||    
T  13729595 aagaccaccagaaaatttctccacaataggtgtacctattagatatcgaattttaaatagtaaagaccctaccatcgtggatggt 13729679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 17793162 - 17793106
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||||| |||||||||  ||||||| || |||||||||||| |||||    
T  17793162 tacctattaggtaccatgtcttaaatgtttaagactatcccattgtggatgctctaa 17793106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 5978729 - 5978764
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagacc 238  Q
    |||||| |||||||||||||||||||||||||||||    
T  5978729 tacctaataggtaccaggtcttaaatagttaagacc 5978764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 5536003 - 5536064
Alignment:
Q  199 gggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    |||||||||| ||||||||  ||||||||||||||||||| | ||| ||  |||||||||||    
T  5536003 gggatacctaataggtaccgtgtcttaaatagttaagacccttccaatggagatggtctaac 5536064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 7206898 - 7206853
Alignment:
Q  193 acaatagggatacctattaggtaccaggtcttaaatagttaagacc 238  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||||    
T  7206898 acaataggagtacctattaggtactaggtcttaaatagtgaagacc 7206853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 8699099 - 8699168
Alignment:
Q  190 tccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||  |||||||||||||||||| |||||||||||  ||||||   | |||||||||||| |||||    
T  8699099 tccacaacggggatacctattaggtacgaggtcttaaatgtttaagattctcccattgtggatgttctaa 8699168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 18806743 - 18806815
Alignment:
Q  165 tcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagac 237  Q
    ||||| |||||||  |||||  |||||| || | ||| |||||| || |||||||||||||||||||||||||    
T  18806743 tcttataagaccctgaaaaagattctccccattgggggtacctaatatgtaccaggtcttaaatagttaagac 18806815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 28540621 - 28540529
Alignment:
Q  163 ggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggt 255  Q
    ||||||| |||||||| |||||| |||||| ||||  || || ||| |||||| ||||||||||||  | |||||| | ||||||| ||||||    
T  28540621 ggtcttataagaccccgaaaaaacttctccccaatgagggtaactaataggtatcaggtcttaaatgttgaagaccctcccattgtagatggt 28540529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 36597160 - 36597242
Alignment:
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaat 228  Q
    |||||| |||||||   |||||||||||||| ||||||||| ||||||| ||| |||||||| | ||||||| | ||||||||||    
T  36597160 ggtcttaagtgagacaatgggtcttagaaga-ccccaaaaattttctccccaa-agggatacatgttaggtatcgggtcttaaat 36597242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 378960 - 378847
Alignment:
Q  64 taaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgg 163  Q
    ||||||||| ||||||| ||||| |||||||||| |||| |||||||| |||||||||||| || |||||||||||||||||| || ||||||| ||| |    
T  378960 taaattgcaattgaaaaacaataatacaatgacaatgatcattttaagaaaaagtaatgtgtggtccacttaagcattgaggttttaagtgagaccctag 378861  T
Q  164 gtcttagaagaccc 177  Q
    ||||||||||||||    
T  378860 gtcttagaagaccc 378847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 6794113 - 6794180
Alignment:
Q  192 cacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||| | |||||||||||| |||||    
T  6794113 cacaatggggatacctattaggtaccaggtcttaaatgtttaagaccctcccattgtggatgctctaa 6794180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 11703335 - 11703430
Alignment:
Q  162 gggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtct 257  Q
    ||||||||  ||||||||||| | |||  ||||||| ||| |||||| |||||||| ||||||| || |||||||||  |||||||||||||||||    
T  11703335 gggtcttaagagacccccaaatatttttcccacaatgggggtacctaataggtaccgggtcttacatggttaagacctcaccattgtggatggtct 11703430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 29383840 - 29383908
Alignment:
Q  191 ccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||| ||| |||||||||||||||| |||||||||  |||||||  | |||||||||||| |||||    
T  29383840 ccacaatgggggtacctattaggtaccacgtcttaaatgtttaagactctcccattgtggatgctctaa 29383908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 52120079 - 52120189
Alignment:
Q  63 gtaaattgcagttgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctg 162  Q
    |||||||||| | |||||||||||||||||||||| | ||||||||| |||||||||||  |||| |||||||| |||||||||||| ||||||| ||||    
T  52120079 gtaaattgcaatagaaaagcaatagtacaatgacaattattattttaggcaaaagtaatacggggtccacttaaacattgaggtcttaagtgaga-cctg 52120177  T
Q  163 ggtcttagaaga 174  Q
    ||||||||||||    
T  52120178 ggtcttagaaga 52120189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 17378672 - 17378829
Alignment:
Q  99 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaata 198  Q
    |||||||||||   |||||| |||||||| | ||||||| || |||||||| ||||||||| |||||||||  ||||||| ||    |||||| ||| |     
T  17378672 tgattattttatttaaaagtgatgtggggtctacttaagaatggaggtcttaagtgagatcatgggtcttaagagacccctaacttttttctc-acattg 17378770  T
Q  199 gggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtct 257  Q
    ||||||||||||||||||| ||| |||||| || |||||| ||||| ||||||||||||    
T  17378771 gggatacctattaggtaccgggttttaaatggtaaagaccctaccaatgtggatggtct 17378829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 31153539 - 31153654
Alignment:
Q  144 ggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccatacc 243  Q
    |||||| ||| ||| ||||||||||||||||||||||||   |||  ||||||| ||  |||||||||||||| ||||||||||| || ||||||  |||    
T  31153539 ggtcttaagttagaccctgggtcttagaagacccccaaatttttttcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcacc 31153638  T
Q  244 attgtggatggtctaa 259  Q
    |||||||||| |||||    
T  31153639 attgtggatgctctaa 31153654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 53143481 - 53143386
Alignment:
Q  163 ggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||  ||||||||||| |||||  ||||||| ||| |||| | ||||||||| ||||||||| |||||||||  |||||||||||||||||||    
T  53143481 ggtcttaagagacccccaaataattttcccacaatgggg-tacccaataggtaccatgtcttaaatggttaagacctcaccattgtggatggtctaa 53143386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 259
Target Start/End: Complemental strand, 48457894 - 48457764
Alignment:
Q  129 ccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaat 228  Q
    ||||||||| ||  ||||||| ||||||| || ||||||||  ||||||||||| | ||| |||||||| ||| |||||| ||||||   || |||||||    
T  48457894 ccacttaagaatgaaggtcttaagtgagaccccgggtcttaagagacccccaaatattttttccacaatgggggtacctaataggtattggggcttaaat 48457795  T
Q  229 agttaagaccataccattgtggatggtctaa 259  Q
     ||||||||   |||||||| ||||||||||    
T  48457794 ggttaagacttcaccattgtagatggtctaa 48457764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 50345949 - 50345791
Alignment:
Q  99 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaata 198  Q
    |||||||||||   ||||||  ||||||| |||||||||  | |||||||| ||||||||| | |||||||  |||||||||| |  ||| ||||  ||     
T  50345949 tgattattttattaaaaagtggtgtggggaccacttaagattggaggtcttaagtgagatcatcggtcttaagagacccccaatatttttttcca-tatt 50345851  T
Q  199 gggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||| |||||||||| | |||||||||| || |||||||||||  |||||||| |||||    
T  50345850 gggata-ctattaggtatcgggtcttaaatggtaaagaccataccgatgtggatgctctaa 50345791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 3432841 - 3432746
Alignment:
Q  164 gtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||||||||   |||| ||||||| |   ||||||||| |||| ||||||||||| || ||||||  |||||||| |||| |||||    
T  3432841 gtcttagaagacccccaaattttttccccacaatggaagtacctattatgtactaggtcttaaatggtgaagacctcaccattgtagatgttctaa 3432746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 7932530 - 7932624
Alignment:
Q  165 tcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||| ||||||  || | ||| ||||||  |||||||||||||| ||||||||||| || ||||||  || ||||| |||| |||||    
T  7932530 tcttagaagacctccaaaattttcccccataataggagtacctattaggtactaggtcttaaatggtgaagacctcactattgtagatgctctaa 7932624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 14477078 - 14477152
Alignment:
Q  185 atttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||| |||||||| ||||||| ||||||||||| ||||||||||  | |||||  | |||||||||||| |||||    
T  14477078 atttttccacaatggggatacatattaggtaccgggtcttaaatgttgaagactctcccattgtggatgctctaa 14477152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 40485206 - 40485292
Alignment:
Q  99 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaa 185  Q
    ||||||||||||  ||||||| |||| || ||||||||| ||   | |||| ||||||||||| | |||||||||||| ||||||||    
T  40485206 tgattattttaataaaaagtagtgtgaggtccacttaagaataatgatcttaagtgagatcctcgatcttagaagacctccaaaaaa 40485292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 22909267 - 22909214
Alignment:
Q  206 ctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||||||||||||||||||| |||||||  | ||||||| |||| |||||    
T  22909267 ctattaggtaccaggtcttaaatatttaagactctcccattgtagatgctctaa 22909214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 30595234 - 30595331
Alignment:
Q  162 gggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||| |||| ||  |||||  |||||| |||| ||| |||||| ||||||| ||||||||||| ||||||||| |  |||||  ||||||||||    
T  30595234 gggtcttataagatcctaaaaaagattctcctcaatgggggtacctaataggtacaaggtcttaaatggttaagaccctcacattggagatggtctaa 30595331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 7885857 - 7885801
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||||||| | |||||||||| || ||||||  ||||||| |||||||||||    
T  7885857 tacctattaggtatcgggtcttaaatggtgaagacctcaccattggggatggtctaa 7885801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 45707541 - 45707481
Alignment:
Q  200 ggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    ||||| |||||||||||| | |||||||| || ||||||  ||||||| ||||||||||||    
T  45707541 ggatatctattaggtaccggatcttaaatggtgaagacctcaccattgaggatggtctaac 45707481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 42401012 - 42400883
Alignment:
Q  99 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagaccccca--aaaaatttctccacaa 196  Q
    ||||||||||||  ||||||| ||||||| ||||||||| ||   |||||| ||||||| ||||||||||||||||||||||  |||||||||||  |||    
T  42401012 tgattattttaataaaaagtagtgtggggtccacttaagaataagggtcttaagtgagaccctgggtcttagaagacccccaagaaaaatttctc--caa 42400915  T
Q  197 tagggatacctattaggtaccaggtcttaaat 228  Q
    | ||| ||||||||||||||| ||||||||||    
T  42400914 tgggggtacctattaggtaccgggtcttaaat 42400883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 15457161 - 15457279
Alignment:
Q  64 taaattgcagttgaaaagcaatagtacaatgacattgattattt-----taagcaaaagtaatgtggggcccacttaagcattgaggtcttgagtgagat 158  Q
    ||||||| | |||||||||||||||||  ||||| |||||||||     |||   ||| |||||||||| |||||||||||| |||||||| ||| |||     
T  15457161 taaattgtaattgaaaagcaatagtactgtgacaatgattatttaaaaataaaataaaataatgtggggtccacttaagcatcgaggtcttaagttagac 15457260  T
Q  159 cctgggtcttagaagaccc 177  Q
    |||||||| ||||||||||    
T  15457261 cctgggtcctagaagaccc 15457279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 30335918 - 30336013
Alignment:
Q  164 gtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||| |||||||||||||| ||  ||||| | |   || |||||||||||| |||||||||| || ||||||||| || ||||||||||||||    
T  30335918 gtcttaggagacccccaaaaaaatttcccacattggcagtatctattaggtaccgggtcttaaatggtaaagaccatatcaatgtggatggtctaa 30336013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 33259577 - 33259715
Alignment:
Q  121 tgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccagg 220  Q
    ||||||| ||||||||| || | | || | ||||||| || ||||||||  ||||||| |||   |||| ||||||| ||| |||||||| |||| | ||    
T  33259577 tgtggggtccacttaagaatggggatcataagtgagaccccgggtcttaagagaccccaaaattttttc-ccacaatgggggtacctatttggtatcggg 33259675  T
Q  221 tcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    |||||||| || ||||||  ||||||||||||||||||||    
T  33259676 tcttaaatggtgaagacctcaccattgtggatggtctaac 33259715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 33279736 - 33279874
Alignment:
Q  121 tgtggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccagg 220  Q
    ||||||| ||||||||| || | | || | ||||||| || ||||||||  ||||||| |||   |||| ||||||| ||| |||||||| |||| | ||    
T  33279736 tgtggggtccacttaagaatggggatcataagtgagaccccgggtcttaagagaccccaaaattttttc-ccacaatgggggtacctatttggtatcggg 33279834  T
Q  221 tcttaaatagttaagaccataccattgtggatggtctaac 260  Q
    |||||||| || ||||||  ||||||||||||||||||||    
T  33279835 tcttaaatggtgaagacctcaccattgtggatggtctaac 33279874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 7789631 - 7789575
Alignment:
Q  203 tacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||||||||||  |||||||||| || |||||| ||||| ||||||||||||||    
T  7789631 tacctattaggtactgggtcttaaatggtaaagaccttaccaatgtggatggtctaa 7789575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 5827511 - 5827409
Alignment:
Q  124 ggggcccacttaagcattgaggtcttgagtgagatcctgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtct 223  Q
    |||| |||||||||  ||| |||||| ||||||| |||| ||||||  ||||||||||    ||| ||||||||||||||||||||||  |||| | |||    
T  5827511 ggggtccacttaagatttggggtcttaagtgagaccctgagtcttaagagacccccaatt--tttttccacaatagggatacctattaaataccggatct 5827414  T
Q  224 taaat 228  Q
    |||||    
T  5827413 taaat 5827409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 19512803 - 19512734
Alignment:
Q  190 tccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||| | ||||||||||||||| ||| |||||||| || ||||||   |||||||||||| |||||    
T  19512803 tccacaatggagatacctattaggtatcagatcttaaatggtgaagacctcgccattgtggatgctctaa 19512734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 24555942 - 24556014
Alignment:
Q  166 cttagaagacccccaaaaaatttctccacaatagggatacctattaggtaccaggtcttaaatagttaagacc 238  Q
    |||| |||||||  |||||  |||||| || ||||| |||||| |||||| | ||||||||||||||||||||    
T  24555942 cttataagaccctgaaaaagattctccccattaggggtacctaataggtaacgggtcttaaatagttaagacc 24556014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 50270643 - 50270575
Alignment:
Q  191 ccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    ||||||| ||| ||||||||||||| | ||||||||||  |||||||  | |||||||||||| |||||    
T  50270643 ccacaatgggggtacctattaggtaacgggtcttaaatgtttaagactctcccattgtggatgctctaa 50270575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 222 - 125
Alignment:
Q  161 tgggtcttagaagacccccaaaaaatttctc-cacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtct 257  Q
    |||||||||  ||||||||||| | ||| || |||||| ||| |||||| |||| | ||||| |||||| |||||||||  |||||||||||||||||    
T  222 tgggtcttaagagacccccaaatattttttctcacaatgggggtacctaataggcatcaggtattaaatggttaagacctaaccattgtggatggtct 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 10135 - 10204
Alignment:
Q  190 tccacaatagggatacctattaggtaccaggtcttaaatagttaagaccataccattgtggatggtctaa 259  Q
    |||||||| | ||||||||||||||| ||| |||||||| || ||||||   |||||||||||| |||||    
T  10135 tccacaatggagatacctattaggtatcagatcttaaatggtgaagacctcgccattgtggatgctctaa 10204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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