View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19782_low_24 (Length: 395)
Name: NF19782_low_24
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 98 - 380
Target Start/End: Original strand, 6286235 - 6286518
Alignment:
| Q |
98 |
tgaaagagaatgaaaaatgatattgttgtaacaaaaatgaaatattccataccaatatttgcttctccttgaatttatgtaacaaaatagggagtcatta |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6286235 |
tgaaagagaatgaaaaattatattgttgtaacaaaaatgaaatattccataccaatatttgcttctccttgaatttatgtaacaaaatagggagtcatta |
6286334 |
T |
|
| Q |
198 |
tt-gagtttgactataaggcaagcaatgatcatgactcgtaattaatgtcacaagagggtcaacagctagctaggtttgtcattgacattgctcactcct |
296 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6286335 |
tttgagtttgactataaggaaagcaatgatcatgactcgtaattaatgtcacaagggggtcaacagctagctaggtttgtcattgacattgctcactcct |
6286434 |
T |
|
| Q |
297 |
tatatgaatgagtttactctttttcatccaagaggatatccatgaaacttaaaagcattttatgtgacctataggactctaatg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6286435 |
tatatgaatgagtttactctttttcatccaagaggatatccatgaaacttaaaagcattttatgtgacctataggactctaatg |
6286518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University