View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_25 (Length: 393)
Name: NF19782_low_25
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 24387147 - 24386786
Alignment:
| Q |
18 |
acaacaaataatataagcatatgatcgggacaatgattaagaagtttaaaacgccaaaggtattatattaaaagaatataataagagtaattttaattgc |
117 |
Q |
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| T |
24387147 |
acaacaaataatataagcatatgatcggggcaatgattaagaagtttaaaacgccaaaggtattatattaaaagaatataataagagtaattttaattgc |
24387048 |
T |
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| Q |
118 |
accaatcatctctaaatataaaatcacaatcggcattgcaattttgatannnnnnnncttaatatatttattgaggagtaccatttattattcaaactat |
217 |
Q |
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| T |
24387047 |
accaatcatctctaaatataaaatcacaatcgacattgcaattttgatattttttttcttaatttatttattgaggagtaccatttattattcaaactat |
24386948 |
T |
|
| Q |
218 |
gatgaagaaatttttcacttaatttagctcctgcaatttgcttcatcagataccgtgcaaagaatcgctgagtatgttaaattgtcaatgcattttgttt |
317 |
Q |
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| T |
24386947 |
gatgaagaaatttttcacttaatttagctcctgcaatttgcttcatcagataccgtgcaaagaatcgctgagtatgttaaattgtcaatgcattttgttt |
24386848 |
T |
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| Q |
318 |
aatggacgataatctcatgactaagatattgacacactctcaatccattgtgacactctctg |
379 |
Q |
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| T |
24386847 |
aatggacaataatctcatgactaagatattgacacactctcaatccattgtgacactctctg |
24386786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 126 - 371
Target Start/End: Original strand, 16151549 - 16151791
Alignment:
| Q |
126 |
tctctaaatataaaatcacaatcggcattgcaattttgatannnnnnnnctt---aatatatttattga--ggagtaccatttattattcaaactatgat |
220 |
Q |
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| T |
16151549 |
tctccaaatataaaatcacaatcgacattgcaattttgatcttttttttcttcttaatttatgtattgattggggtaccattttttattcaaactatgaa |
16151648 |
T |
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| Q |
221 |
gaagaaatttttcacttaatttagctcctgcaatttgcttcatcagataccgtgcaaagaatcgctgagtatgttaaattgtcaatgcattttgtttaat |
320 |
Q |
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| T |
16151649 |
gaagaaaattttaacttagttcagcttctgcaatttgcttcataagatacagtagaaagaattgtcgagtatgt--------caatgcattttgtttaat |
16151740 |
T |
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| Q |
321 |
ggacgataatctcatgactaagatattgacacactctcaatccattgtgac |
371 |
Q |
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| T |
16151741 |
ggacgataatctcatgactaagatattgacacactctcaatccactgtgac |
16151791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 362
Target Start/End: Original strand, 16140822 - 16140980
Alignment:
| Q |
195 |
gtaccatttattattcaaactatgatgaagaaatttttcacttaatttagctcctgcaatttgcttcatcagataccgtgcaaagaatcgctgagtatgt |
294 |
Q |
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| T |
16140822 |
gtaccattt-ttattcaaactatgaagaagaaaattttaacttaatttagcttctgcaatttgcttcataagagacagtcgaaagaattgttgagtatgt |
16140920 |
T |
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| Q |
295 |
taaattgtcaatgcattttgtttaatggacgataatctcatgactaagatattgacacactctcaatc |
362 |
Q |
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| T |
16140921 |
--------caatgcattttgtttaatggaggataatctcatgactaagatattgacacactctcaatc |
16140980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 8776390 - 8776335
Alignment:
| Q |
306 |
tgcattttgtttaatggacgataatctcatgactaagatattgacacactctcaat |
361 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
8776390 |
tgcatttagtttaatggacgataatctcatgactaaggtattcacacacgctcaat |
8776335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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