View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_26 (Length: 392)
Name: NF19782_low_26
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 33854368 - 33853989
Alignment:
| Q |
1 |
tttaatatttagggggagacggatgattaccattttatttgtaaaatagttgagatgtttgaagcagttgatggaggattgtttttcactgcgcaatggt |
100 |
Q |
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| T |
33854368 |
tttaatatttagggggagacggatgattaccattttatttgtaaaatagttgagatgtttgaagcagttgatggaggattgtttttcacagcgcaatggt |
33854269 |
T |
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| Q |
101 |
actatagggctaatgacactgtaagtttacaaatacatgtttcaaccacaattatgtcctacacacttaattgatt----annnnnnnnnnngaaataaa |
196 |
Q |
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| T |
33854268 |
actatagggctaatgacacagtaagtttacaaatacatgtttcaaccacaattatgtcctacacacttaattgattttttattttttttttggaaatgaa |
33854169 |
T |
|
| Q |
197 |
atgttattcatttagttataatacattctaattctaattgcaggtcatcaagcaactaggaaatctcattgagccaaaaagagtatttttctcggaaatc |
296 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33854168 |
atgttattcatttagctataatacattctaattctaactgcaggtcatcaaacaactaggaaatctcattgagccaaaaagagtatttttctctgaaatc |
33854069 |
T |
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| Q |
297 |
caggatgacaatccgttggattgtcttgttaagaagttaaccattcttagattagagctcaaggtatgttggcaagttat |
376 |
Q |
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| T |
33854068 |
caggatgacaatccgttggattgtcttgttaagaagttaaccattcttagattagagctcaaggtatgttggcaagttat |
33853989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 28214419 - 28214511
Alignment:
| Q |
249 |
caactaggaaatctcattgagccaaaaagagtatttttctcggaaatccaggatgacaatccgttggattgtcttgttaagaagttaaccatt |
341 |
Q |
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| T |
28214419 |
caactaggaaatctcattaagccaaaacgagtatttttgtcagaagtccaggatgacaatccattggattgtcttgttgagaagttaaccatt |
28214511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 28214319 - 28214416
Alignment:
| Q |
22 |
gatgattaccattttatttgtaaaatagttgagatgtttgaagcagttgatggaggattgtttttcactgcgcaatggtactatagggctaatgacac |
119 |
Q |
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||||| |||||||| ||||||||||| | ||||||||||||||||||||||||| |||| |||||| || |||||||| |||||| | |||||||| |
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| T |
28214319 |
gatgactaccatttcatttgtaaaatcatggagatgtttgaagcagttgatggagagttgtatttcacagcccaatggtattataggtccaatgacac |
28214416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 32504025 - 32503903
Alignment:
| Q |
1 |
tttaatatttagggggagacggatgattaccattttatttgtaaaatagttgagatgtttgaagcagttgatggaggattgtttttcactgcgcaatggt |
100 |
Q |
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| T |
32504025 |
tttaatatttaggaggagaaagatgattatcatttcatttgcaaaattgtggaaatgtttgaagcaattgat-gagaactgtatttcacagcgcaatggt |
32503927 |
T |
|
| Q |
101 |
actatagggctaatgacactgtaa |
124 |
Q |
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| T |
32503926 |
attatagagccaatgacacagtaa |
32503903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 26142757 - 26142817
Alignment:
| Q |
295 |
tccaggatgacaatccgttggattgtcttgttaagaagttaaccattcttagattagagct |
355 |
Q |
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| T |
26142757 |
tccaggatgacaatccattggattgtcttgttggaaagttaaacattgctagattagagct |
26142817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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