View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_29 (Length: 371)

Name: NF19782_low_29
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_29
NF19782_low_29
[»] chr3 (5 HSPs)
chr3 (109-371)||(26493371-26493633)
chr3 (109-153)||(7941043-7941087)
chr3 (109-153)||(32592150-32592194)
chr3 (109-153)||(17561692-17561736)
chr3 (109-153)||(20485632-20485676)
[»] chr2 (2 HSPs)
chr2 (109-152)||(28139653-28139696)
chr2 (109-153)||(16544304-16544348)
[»] chr7 (3 HSPs)
chr7 (109-151)||(13644356-13644398)
chr7 (109-151)||(14101383-14101425)
chr7 (109-151)||(14411400-14411442)
[»] chr8 (7 HSPs)
chr8 (109-148)||(41472110-41472149)
chr8 (109-151)||(13782170-13782212)
chr8 (113-151)||(34892909-34892947)
chr8 (109-151)||(37651751-37651793)
chr8 (109-151)||(40740841-40740883)
chr8 (109-154)||(20854549-20854594)
chr8 (109-153)||(16939313-16939357)
[»] chr4 (3 HSPs)
chr4 (109-151)||(43176724-43176766)
chr4 (109-151)||(48806420-48806462)
chr4 (109-153)||(2448910-2448954)
[»] chr1 (3 HSPs)
chr1 (109-151)||(12627174-12627216)
chr1 (110-151)||(5329058-5329099)
chr1 (109-154)||(48455427-48455472)
[»] chr6 (2 HSPs)
chr6 (109-152)||(11157644-11157687)
chr6 (109-154)||(35096603-35096648)
[»] chr5 (3 HSPs)
chr5 (109-151)||(35651350-35651392)
chr5 (109-155)||(35671013-35671059)
chr5 (109-153)||(30611171-30611215)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 109 - 371
Target Start/End: Complemental strand, 26493633 - 26493371
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctttataataagattcaattcaccattacaagcattaattttatgatattcaccgctt 208  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  26493633 ctcgtgtttctcagccaaatcaaatctgtgaacaacaatactctttataataagattcaattcaccattacaagcattaattttaagatattcactgctt 26493534  T
Q  209 gtgacaggcactttggccaacaaggggatataccatacaatagaaaacttctacaaacatcaaattctgctaagagttttgatcacaaagagaatccttc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26493533 gtgacaggcactttggccaacaaggggatataccatacaatagaaaacttctacaaacatcaaattctgccaagagttttgatcacaaagagaatccttc 26493434  T
Q  309 accttcatcatcaccaacaccttcaccagtttctccatcagaaagtcactcaaattcaccatc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26493433 accttcatcatcaccaacaccttcaccagtttctccatcagaaagtccctcaaattcaccatc 26493371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 7941087 - 7941043
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  7941087 ctcgtgtttctcagccaaaccaaatgtgtgaacaacaatactctt 7941043  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 32592194 - 32592150
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||    
T  32592194 ctcgtgtttctcagccaaaccaaatgtgtcaacaacaatactctt 32592150  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 17561736 - 17561692
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||||    
T  17561736 ctcgtgtgtctcagccaaatcaaatgtgtcaacaacaattctctt 17561692  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 20485632 - 20485676
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    |||||||||||||||||||  |||||||||||||  |||||||||    
T  20485632 ctcgtgtttctcagccaaactaaatgtgtgaacatcaatactctt 20485676  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 28139653 - 28139696
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactct 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  28139653 ctcgtgtttctcagccaaatcaaatgtgtgaacaacaatactct 28139696  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 16544348 - 16544304
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||    
T  16544348 ctcgtgtttctcggccaaaccaaatgtgtgaacaacaatactctt 16544304  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 13644398 - 13644356
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  13644398 ctcgtgtttctcagccaaatcaaatgtgtgaacaacaatactc 13644356  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 14101425 - 14101383
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  14101425 ctcgtgtttctcagccaaatcaaatgtgtgaacatcaatactc 14101383  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 14411442 - 14411400
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  14411442 ctcgtgtttctcagccaaatcaaatgtgtgaacatcaatactc 14411400  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 41472110 - 41472149
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaata 148  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  41472110 ctcgtgtttctcagccaaatcaaatgtgtgaacaacaata 41472149  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 13782212 - 13782170
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  13782212 ctcgtgtttctcagccaaatcaaatgtgtcaacaacaatactc 13782170  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 34892909 - 34892947
Alignment:
Q  113 tgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  34892909 tgtttctcagccaaatcaaatgtgtgaacaacaatactc 34892947  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 37651793 - 37651751
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||    
T  37651793 ctcgtgtttctcagccaaaccaaatgtgtcaacaacaatactc 37651751  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 40740883 - 40740841
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||| ||||||||||||||  |||||||    
T  40740883 ctcgtgtttctcagccaaaccaaatgtgtgaacagcaatactc 40740841  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 20854594 - 20854549
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactcttt 154  Q
    ||||||||||||||||  ||||||||||||||||| ||| ||||||    
T  20854594 ctcgtgtttctcagccttatcaaatgtgtgaacaacaattctcttt 20854549  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 16939357 - 16939313
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    ||||||||||||||| ||| ||||||||||||||  |||||||||    
T  16939357 ctcgtgtttctcagcaaaaccaaatgtgtgaacagcaatactctt 16939313  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 43176724 - 43176766
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  43176724 ctcgtgtttctcagccaaaccaaatgtgtgaacaacaatactc 43176766  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 48806462 - 48806420
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  48806462 ctcgtgtttctcagccaaaccaaatgtgtgaacaacaatactc 48806420  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 2448954 - 2448910
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    ||||||||| ||||||||| ||||||||||||||  |||||||||    
T  2448954 ctcgtgtttatcagccaaaccaaatgtgtgaacagcaatactctt 2448910  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 12627216 - 12627174
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  12627216 ctcgtgtttctcagccaaaccaaatgtgtgaacaacaatactc 12627174  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 5329099 - 5329058
Alignment:
Q  110 tcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  5329099 tcgtgtttctcagccaaaccaaatgtgtgaacaacaatactc 5329058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 48455472 - 48455427
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactcttt 154  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||    
T  48455472 ctcgtgtttctcaaccaaatcaaatgtgtgaacagcaatactcttt 48455427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 11157687 - 11157644
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactct 152  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||    
T  11157687 ctcgtatttctcagccaaaccaaatgtgtgaacaacaatactct 11157644  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 35096648 - 35096603
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactcttt 154  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||||||    
T  35096648 ctcgtgtttctcaaccaaaccaaatgtgtaaacaacaatactcttt 35096603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 35651392 - 35651350
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactc 151  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||    
T  35651392 ctcgtgtttctcagccaaaccaaatgtgtcaacaacaatactc 35651350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 35671059 - 35671013
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactcttta 155  Q
    |||||||||||||  |||||||||||||| ||||| |||||||||||    
T  35671059 ctcgtgtttctcaatcaaatcaaatgtgtcaacaacaatactcttta 35671013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 30611215 - 30611171
Alignment:
Q  109 ctcgtgtttctcagccaaatcaaatgtgtgaacaagaatactctt 153  Q
    ||||||||||||||||  ||||||||||||||||| ||| |||||    
T  30611215 ctcgtgtttctcagccttatcaaatgtgtgaacaacaattctctt 30611171  T

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