View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_32 (Length: 360)

Name: NF19782_low_32
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_32
NF19782_low_32
[»] chr7 (12 HSPs)
chr7 (13-343)||(32727174-32727509)
chr7 (13-340)||(36217748-36218075)
chr7 (13-337)||(35981617-35981941)
chr7 (13-337)||(36003029-36003353)
chr7 (12-343)||(36221736-36222067)
chr7 (49-340)||(35977087-35977378)
chr7 (49-340)||(35998499-35998790)
chr7 (18-340)||(35946393-35946715)
chr7 (18-332)||(35938939-35939253)
chr7 (18-340)||(35957601-35957923)
chr7 (172-329)||(35952171-35952328)
chr7 (18-134)||(35952032-35952148)
[»] chr1 (2 HSPs)
chr1 (13-340)||(18125316-18125643)
chr1 (22-343)||(18117672-18117993)
[»] chr2 (1 HSPs)
chr2 (17-343)||(26328778-26329104)
[»] chr4 (3 HSPs)
chr4 (151-340)||(49352205-49352394)
chr4 (76-113)||(7128578-7128615)
chr4 (76-113)||(7721852-7721889)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 32727174 - 32727509
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727174 aatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 32727273  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaac-----aaagataaacaatcttctagggaaagaccttccaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| |||| |||||||||||||||    
T  32727274 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaattaaagataaacaatctcctagagaaagaccttccaaa 32727373  T
Q  208 acgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatca 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  32727374 acgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatcaaatctatca 32727473  T
Q  308 actcaatccattttgcacgatcatcattccatatat 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  32727474 actcaatccattttgcacgatcatcattccatatat 32727509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 36218075 - 36217748
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    |||| |||||||| ||||||| |||||||||| |  ||||||||||  ||||||||||  || ||||| || ||||||||||||||||||||||| ||||    
T  36218075 aataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagcggaactccagcacattttttcacaatttcttttccaa 36217976  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    | | ||| |||| |||||||||  || |||| || ||||| ||||||||||| ||||||| ||| |||||||| ||||  ||||||||||||||||| ||    
T  36217975 tctccactagatttggatatttttcttcttctccatccttgaatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacata 36217876  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
    ||| |||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||| ||||| ||  |||||  |||||||    
T  36217875 cgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactca 36217776  T
Q  313 atccattttgcacgatcatcattccata 340  Q
    ||||||||||||||||||||||||||||    
T  36217775 atccattttgcacgatcatcattccata 36217748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 35981617 - 35981941
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  35981617 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 35981716  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| |||||  ||    
T  35981717 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata 35981816  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
    ||  |||| |  ||||||||| |||| ||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||  ||||| ||||||||    
T  35981817 cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca 35981916  T
Q  313 atccattttgcacgatcatcattcc 337  Q
    |||||||||||||||||||||||||    
T  35981917 atccattttgcacgatcatcattcc 35981941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 36003029 - 36003353
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  36003029 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 36003128  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| |||||  ||    
T  36003129 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata 36003228  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
    ||  |||| |  ||||||||| |||| ||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||  ||||| ||||||||    
T  36003229 cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca 36003328  T
Q  313 atccattttgcacgatcatcattcc 337  Q
    |||||||||||||||||||||||||    
T  36003329 atccattttgcacgatcatcattcc 36003353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 36222067 - 36221736
Alignment:
Q  12 gaatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgcca 111  Q
    |||||||||||||||||||||| ||||||| || |  ||||||||||||||| | ||||  || ||||| || ||||||||||||||||||||||| |||    
T  36222067 gaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcggaactccagcacattttttcacaatttcttttcca 36221968  T
Q  112 atatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgt 211  Q
    || | ||| |||| || ||||||  || |||| || || |||||||||||||| ||||||||| | |||||    ||| | ||||||||||||||||  |    
T  36221967 atctccactagatttgaatatttttcttcttctccgtctttaaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatat 36221868  T
Q  212 acgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactc 311  Q
    |||| |||| ||||| |||||| |||||||||||||| |||| |||||||||||||| ||| ||| || || |||| ||||| ||  ||| || ||||||    
T  36221867 acgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactc 36221768  T
Q  312 aatccattttgcacgatcatcattccatatat 343  Q
    ||||||||||||||| ||||||||||||||||    
T  36221767 aatccattttgcacggtcatcattccatatat 36221736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 49 - 340
Target Start/End: Original strand, 35977087 - 35977378
Alignment:
Q  49 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 148  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35977087 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35977186  T
Q  149 ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt 248  Q
    |||| || |||||||||||||||| |||||||||||| | | | |||||||||| |||||  || |  |||| |  ||||||||| ||||||||||||||    
T  35977187 ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt 35977286  T
Q  249 gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatcatcattccata 340  Q
     |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| ||| ||||||||||||||||||||||    
T  35977287 actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccata 35977378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 49 - 340
Target Start/End: Original strand, 35998499 - 35998790
Alignment:
Q  49 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 148  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35998499 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35998598  T
Q  149 ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt 248  Q
    |||| || |||||||||||||||| |||||||||||| | | | |||||||||| |||||  || |  |||| |  ||||||||| ||||||||||||||    
T  35998599 ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt 35998698  T
Q  249 gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatcatcattccata 340  Q
     |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| ||| ||||||||||||||||||||||    
T  35998699 actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccata 35998790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35946393 - 35946715
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    ||||||| ||| |||| | |||||||| |  |||||| ||||||||||||| |  ||||||||||||   |||||||||||||||||||| || ||        
T  35946393 ccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccccttggcattttttcacaatttcttttcctatcgct 35946492  T
Q  118 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 217  Q
    || |||| |||||| ||   | ||||||||||||| ||||||||||||||||||| ||| |||||||  | | | ||||||||||||||||  || |  |    
T  35946493 actagatttggatactttttttcttcaccttccttgaatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggag 35946592  T
Q  218 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 317  Q
    ||| |  ||||||||| |||||||||| ||| || ||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| |||    
T  35946593 gaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagcca 35946692  T
Q  318 ttttgcacgatcatcattccata 340  Q
     ||||||||||||||||||||||    
T  35946693 ctttgcacgatcatcattccata 35946715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 35938939 - 35939253
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    |||||||||||||||| ||||||| || |  ||||||||||||||| ||||||  |||||||| |||  |||||||||||||||||| ||  |||| | |    
T  35938939 ccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttc 35939038  T
Q  118 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 217  Q
    || |||| |||||||||  || |||||||||||||||||||  |||||||||||| ||||||||  |  |||   ||||| || |  || |  |||||||    
T  35939039 acaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggccatgtaatagatacgagg 35939138  T
Q  218 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 317  Q
    ||| ||| ||| ||||||||||||| || || || ||||| ||||| |||||||||| | || |||  || ||||||||  ||||| |||||||||||||    
T  35939139 gaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaactcaatcca 35939238  T
Q  318 ttttgcacgatcatc 332  Q
    ||||| |||||||||    
T  35939239 ttttgaacgatcatc 35939253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35957601 - 35957923
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    ||||||| ||| |||| | |||||||| |  |||||| |||| |||||||| |  ||||||||||||   |||||||||||||||||||| ||||| |      
T  35957601 ccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtggaaccccttggcattttttcacaatttcttttccaatctct 35957700  T
Q  118 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 217  Q
    ||  ||| |||||| ||   | |||| |||||||| ||||||||||||||||||| ||||| |||||| | | | ||||||||||  ||||| || |       
T  35957701 acttgatttggataatttttttcttcgccttccttgaatgcccatttgacaaacagagatatacaatcctttggagaaagaccttttaaaacataaggaa 35957800  T
Q  218 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 317  Q
     || |  |||||||||||||||||||||||| || ||||| ||||| || ||||||||||||| |||||| ||||||||  | || ||||| |||| |||    
T  35957801 aaacatcacccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagcca 35957900  T
Q  318 ttttgcacgatcatcattccata 340  Q
     ||||||||||||||||||||||    
T  35957901 ctttgcacgatcatcattccata 35957923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 329
Target Start/End: Original strand, 35952171 - 35952328
Alignment:
Q  172 aaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattt 271  Q
    |||||||||||||  | | | |||||||||| |||||| |||||||||| | ||||||||||  ||||||||||  | |||||||| ||||| || ||||    
T  35952171 aaagataaacaattctttggagaaagacctttcaaaacatacgagggaacattacccatcatccaagcaattgaactactacgtgttgtcaccataattt 35952270  T
Q  272 tgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatc 329  Q
    ||||| ||| |||||| |||| ||   ||| | |||| |||||||| |||||||||||    
T  35952271 tgctttctggtgcaccaacttctagcaaatatttcaattcaatccactttgcacgatc 35952328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 35952032 - 35952148
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    ||||||| |||||||  | |||||||| | ||||||||| |||| | ||||||  ||||||||||||  ||||||||||||| | ||||| ||||| |      
T  35952032 ccacttacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcacagtatcttttccaatctct 35952131  T
Q  118 acgagatctggatattt 134  Q
    || |||| |||||||||    
T  35952132 actagatttggatattt 35952148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 18125316 - 18125643
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||||||   |||||||||||||| ||||| || |    
T  18125316 aatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaaccccttggcattttttcacaatctcttttccta 18125415  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    | |  || |||| |||||||||  || |||| |||||||| ||||||||||||||||| | |||||||||||| |  |  |||||||||| |||||| ||    
T  18125416 tctctactagatttggatatttttcttcttcgccttccttgaatgcccatttgacaaatagagataaacaatccttcaaagaaagaccttgcaaaacata 18125515  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
     ||||||| | |||||||||| ||||||||||||||  ||||||| ||||| || ||||||||||||  ||  || ||||||||  ||||| |||||||     
T  18125516 tgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaacttttatcaaatctttcaactcg 18125615  T
Q  313 atccattttgcacgatcatcattccata 340  Q
    ||||| ||||||||||||||||||||||    
T  18125616 atccactttgcacgatcatcattccata 18125643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 343
Target Start/End: Original strand, 18117672 - 18117993
Alignment:
Q  22 ttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacga 121  Q
    |||||||||||| ||||||| || |   | |||||||||||||||||    ||||||||||| || ||||| |||||||||||||| || || |  || |    
T  18117672 ttatttaaatcaaattttgaaaacagacagcttcctaatgttctcacgacgagtggaacccccgcgcatttcttcacaatttcttttcctatctcaacta 18117771  T
Q  122 gatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaat 221  Q
    ||| |||||||||  || |||| |||||||| ||||||||||| ||||||||||||||||| | ||| |  ||||| ||||  ||||| || |||||||     
T  18117772 gatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaac 18117871  T
Q  222 agtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccatttt 321  Q
    |||||||||||| || |||||||||||||| ||||| ||| | |||| |||||||||| |||  || ||||| ||  ||||| ||||||| |||||||||    
T  18117872 agtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccatttt 18117971  T
Q  322 gcacgatcatcattccatatat 343  Q
     ||| |||||||||||||||||    
T  18117972 acacaatcatcattccatatat 18117993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 26329104 - 26328778
Alignment:
Q  17 tccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatg 116  Q
    ||||||||| ||||||| |||||||||| |  ||||||||||| ||| |||| |  | ||||| ||||   ||||||||| | || ||||| ||||| |     
T  26329104 tccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcactgctaatggaatccctcggcattttttcgctatatcttttccaatctc 26329005  T
Q  117 cacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgag 216  Q
    |   |||| |||||| || ||| |||| |||||||||||||||||||||||||| | ||| |||||||  || |  ||||||||||  |||   |||  |    
T  26329004 cgatagatgtggatactttacttcttctccttccttaaatgcccatttgacaaagagagacaaacaattatccaaagaaagaccttttaaagtatacatg 26328905  T
Q  217 ggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcc 316  Q
    ||||  || |||||||| ||||||||  |||| |||||||| ||||||| |||||||||| || ||||||| ||||||||   |||| ||||||||||||    
T  26328904 ggaaccgttcccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatcc 26328805  T
Q  317 attttgcacgatcatcattccatatat 343  Q
    |||||| ||| | ||||| ||||||||    
T  26328804 attttgaacggttatcatcccatatat 26328778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 340
Target Start/End: Complemental strand, 49352394 - 49352205
Alignment:
Q  151 ttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgc 250  Q
    ||||| |||||||||||||||| ||||||  |||| ||||| |||||||||||||||| ||| || |   | || |||||||||   |||||||||| ||    
T  49352394 ttaaaagcccatttgacaaacacagataaggaatcctctagagaaagaccttccaaaatgtatgatgtgttggtgcccatcattttggcaattgagtggc 49352295  T
Q  251 tacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatcatcattccata 340  Q
    ||||||| ||||| | || ||| ||| || | || || |||| |||| |||   ||||||||| ||||||  ||||||| ||||||||||    
T  49352294 tacgtgtagtcaccaagactttactttcttcagcgcctacttgtattaaatacttcaactcaacccatttgacacgatcctcattccata 49352205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7128578 - 7128615
Alignment:
Q  76 ggaacccctgcacattttttcacaatttctttgccaat 113  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7128578 ggaacccctgaacattttttcacaatttccttgccaat 7128615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7721852 - 7721889
Alignment:
Q  76 ggaacccctgcacattttttcacaatttctttgccaat 113  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7721852 ggaacccctgaacattttttcacaatttccttgccaat 7721889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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