View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_37 (Length: 335)

Name: NF19782_low_37
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_37
NF19782_low_37
[»] chr6 (7 HSPs)
chr6 (13-319)||(10976578-10976884)
chr6 (57-147)||(22262850-22262940)
chr6 (84-166)||(32930051-32930133)
chr6 (73-183)||(9396171-9396281)
chr6 (102-214)||(13830505-13830616)
chr6 (97-147)||(15318525-15318575)
chr6 (97-147)||(15369170-15369220)
[»] chr7 (4 HSPs)
chr7 (16-223)||(5636600-5636806)
chr7 (73-145)||(24596566-24596638)
chr7 (98-169)||(3268523-3268594)
chr7 (97-147)||(5312385-5312435)
[»] chr4 (8 HSPs)
chr4 (73-145)||(29437894-29437966)
chr4 (98-146)||(12028484-12028532)
chr4 (84-145)||(26160286-26160347)
chr4 (97-216)||(10079756-10079874)
chr4 (57-141)||(33519508-33519592)
chr4 (57-136)||(22120145-22120224)
chr4 (94-147)||(31859473-31859527)
chr4 (13-54)||(17332159-17332200)
[»] chr2 (11 HSPs)
chr2 (57-184)||(24047767-24047894)
chr2 (83-147)||(39732128-39732192)
chr2 (99-147)||(17862859-17862907)
chr2 (100-138)||(21848066-21848104)
chr2 (83-147)||(31262430-31262494)
chr2 (97-147)||(18235918-18235968)
chr2 (60-166)||(18819131-18819237)
chr2 (127-216)||(17152534-17152623)
chr2 (102-147)||(31274320-31274365)
chr2 (97-141)||(13802128-13802172)
chr2 (73-141)||(17884134-17884202)
[»] chr5 (8 HSPs)
chr5 (57-155)||(7742439-7742537)
chr5 (24-120)||(19763413-19763508)
chr5 (57-147)||(17695006-17695096)
chr5 (16-147)||(18178610-18178740)
chr5 (83-140)||(24846613-24846670)
chr5 (83-203)||(16622218-16622338)
chr5 (73-147)||(20695100-20695174)
chr5 (98-139)||(22755442-22755483)
[»] chr1 (3 HSPs)
chr1 (110-223)||(18894755-18894866)
chr1 (94-196)||(27460468-27460570)
chr1 (7-139)||(34533109-34533240)
[»] chr3 (6 HSPs)
chr3 (57-139)||(11475335-11475417)
chr3 (57-147)||(19285568-19285657)
chr3 (57-147)||(33578227-33578317)
chr3 (98-203)||(26419165-26419270)
chr3 (84-145)||(26298250-26298311)
chr3 (98-154)||(23907882-23907938)
[»] scaffold0065 (1 HSPs)
scaffold0065 (83-145)||(12749-12811)
[»] chr8 (1 HSPs)
chr8 (94-139)||(5569762-5569806)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 10976578 - 10976884
Alignment:
Q  13 aatataccttagagagaacaagaggaggaggaaaccctctgccgcttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataa 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10976578 aataaaccttagagagaacaagaggaggaggaaaccctctgccgcttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataa 10976677  T
Q  113 aagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10976678 aagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaa 10976777  T
Q  213 aactgcgtttttctagcaaaaaagcgcaggagcgcatggctggacatgcatgggcacatgaggtagcctttgaagttttctcatgcgcaagggcgcatag 312  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10976778 aactgtgtttttctagcaaaaaagcgcaggagcgcatggctggacatgcatgggcacatgaggtagcctttgaagttttctcatgcgcaagggcgcatag 10976877  T
Q  313 gcagtag 319  Q
    |||||||    
T  10976878 gcagtag 10976884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 22262940 - 22262850
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    ||||||||||||||  ||||||||  ||||| |||  ||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  22262940 cttgaagctatgatgcttgacccttgccttgaaccgctagctttctcaatgaataaaagtgtgtgcaagagtctctatttatggtgcatca 22262850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 32930051 - 32930133
Alignment:
Q  84 cttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagaga 166  Q
    ||||||||  ||| ||||||||||||||||||||| ||| |||||||||||||||| || |||| | ||||| ||||||||||    
T  32930051 cttgtaccgctagctttctgaatgaataaaagtgtatgcaagagtctctatttataatggatcattacttaggaattaagaga 32930133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 9396171 - 9396281
Alignment:
Q  73 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaa 172  Q
    ||||||||  |||||||||| ||  ||| ||||||||||| |||||||||  |||||| |||||||||||||||| | ||||    ||||||||||||||    
T  9396171 ttgacccttgccttgtaccactatctttttgaatgaataagagtgtgtgcacgagtctatatttatagtgcatcatttcttaaggtttaagagatgagaa 9396270  T
Q  173 atgagcttttt 183  Q
     | ||||||||    
T  9396271 ctaagcttttt 9396281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 13830505 - 13830616
Alignment:
Q  102 tgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttga 201  Q
    ||||||||||||||||||||| || |||| |||||||| | | ||| | ||| || |||||| ||| |||| |||||||||| |||||||||| ||| ||    
T  13830505 tgaatgaataaaagtgtgtgcaagggtctttatttata-ttcttcattacttggtgattaagggattagaactgagctttttcctccgatccaacttgga 13830603  T
Q  202 aatcgagctaaaa 214  Q
    || | ||||||||    
T  13830604 aaacaagctaaaa 13830616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 15318575 - 15318525
Alignment:
Q  97 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||| | |||||||||||| || |||||||||||| |||||||||||    
T  15318575 ttttctgattaaataaaagtgtgcgcaagagtctctattcatagtgcatca 15318525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 15369220 - 15369170
Alignment:
Q  97 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||| | |||||||||||| || ||| ||||||||||||||||||||    
T  15369220 ttttctgattaaataaaagtgtgcgcaagaatctctatttatagtgcatca 15369170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 5636806 - 5636600
Alignment:
Q  16 ataccttagagagaacaagaggagga-ggaaaccctctgccgcttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaa 114  Q
    ||||| |||||||||||||||||||  ||| | | ||||||  |||||||| ||||  |||||| |  |||||||| | ||| |||||||||||||||||    
T  5636806 ataccctagagagaacaagaggaggttggagatcatctgcc--ttgaagctttgatgcttgaccattgccttgtactactagctttctgaatgaataaaa 5636709  T
Q  115 gtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaaaa 214  Q
    |||||||| || ||||||||||||||||||||| | |||||| ||||||||||||  |  ||||||||| ||| ||||||||||  ||| | | ||||||    
T  5636708 gtgtgtgcaagggtctctatttatagtgcatcattacttagtgattaagagatgaagaccgagctttttcctctgatccagcttgaaaaacaaactaaaa 5636609  T
Q  215 ctgcgtttt 223  Q
    |||| ||||    
T  5636608 ctgcatttt 5636600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 24596566 - 24596638
Alignment:
Q  73 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 145  Q
    ||||||||  ||||||||||  || |||||||||||||||||| |||||| |  ||||||||||||| |||||    
T  24596566 ttgacccttgccttgtaccatcagctttctgaatgaataaaagagtgtgcaatggtctctatttataatgcat 24596638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 3268523 - 3268594
Alignment:
Q  98 tttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatga 169  Q
    |||||||| |||||||||||||||| ||||||| ||| |||||| ||||| | |||||   |||||||||||    
T  3268523 tttctgaacgaataaaagtgtgtgcaagagtctatatatatagtacatcattacttagggtttaagagatga 3268594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 5312385 - 5312435
Alignment:
Q  97 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    ||||| |||||||||||| ||||||| ||||||||| |||||||| |||||    
T  5312385 ttttcggaatgaataaaaatgtgtgcaagagtctctgtttatagtacatca 5312435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 29437966 - 29437894
Alignment:
Q  73 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 145  Q
    ||||||||  |||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  29437966 ttgacccttgccttgtaccactagttttctgaatgaatacaagagtgtgcaagagtctctatttatagtgcat 29437894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 12028484 - 12028532
Alignment:
Q  98 tttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatc 146  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  12028484 tttctgaatgaataaaagagtgtgcaagagtctctatttatagtgcatc 12028532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 26160347 - 26160286
Alignment:
Q  84 cttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 145  Q
    ||||||||  ||| |||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  26160347 cttgtaccgctagctttctgaatgaataaaagagtgtgcaagagtctctatttatagggcat 26160286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 10079756 - 10079874
Alignment:
Q  97 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagc 196  Q
    |||||||||||||||||||||||||| || || ||| |||||| ||  ||||| ||| || ||||||||||||||| || |  |||| ||| ||||| ||    
T  10079756 ttttctgaatgaataaaagtgtgtgcaagcgtgtctgtttata-tgtttcaatacttggtgattaagagatgagaactgggtgttttcctcggatcctgc 10079854  T
Q  197 tttgaaatcgagctaaaact 216  Q
    || |||| | ||||||||||    
T  10079855 ttggaaaacaagctaaaact 10079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 33519592 - 33519508
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagt 141  Q
    ||||||||| |||| |||||||||  |||| |||   ||| |||||||||||||||||| |||||| || |||| ||||||||||    
T  33519592 cttgaagctctgatgtttgacccttgccttatactgctagatttctgaatgaataaaagagtgtgcaagggtctttatttatagt 33519508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 22120224 - 22120145
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctattt 136  Q
    |||| |||||||||  ||||||||  ||||||||   |||| ||||||||||||||| |||||||| || ||||||||||    
T  22120224 cttggagctatgatgcttgacccttgccttgtacagctagtattctgaatgaataaatgtgtgtgcaagggtctctattt 22120145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 31859473 - 31859527
Alignment:
Q  94 tagttttctgaatgaataaaagtgtgtgccagagtctctatttat-agtgcatca 147  Q
    |||||||||||||||||||||| |||||| || ||||||| |||| |||||||||    
T  31859473 tagttttctgaatgaataaaagagtgtgcaagggtctctacttataagtgcatca 31859527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 17332159 - 17332200
Alignment:
Q  13 aatataccttagagagaacaagaggaggaggaaaccctctgc 54  Q
    ||||| || ||||||||||||||||||||| |||||||||||    
T  17332159 aatattccctagagagaacaagaggaggagaaaaccctctgc 17332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 24047894 - 24047767
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagt 156  Q
    ||||||||| ||||  ||| | || ||||| ||||| ||| ||||| ||||||||| ||||||||| ||| |||||||||||||||||||| | |||||     
T  24047894 cttgaagctctgatgcttggctctttccttataccactagctttctcaatgaataagagtgtgtgcaagaatctctatttatagtgcatcattacttagg 24047795  T
Q  157 aattaagagatgagaaatgagctttttt 184  Q
      |||||||||||||| ||| |||||||    
T  24047794 gtttaagagatgagaattgatctttttt 24047767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 39732192 - 39732128
Alignment:
Q  83 ccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||||  ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  39732192 ccttgtaccgctagctttctgaatgaataaaagtgtgtgaaagagtctctatttatagtgcatca 39732128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 17862907 - 17862859
Alignment:
Q  99 ttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  17862907 ttctgaatgaataaaagtgtgtgcaaaagtctatatttatagtgcatca 17862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 21848066 - 21848104
Alignment:
Q  100 tctgaatgaataaaagtgtgtgccagagtctctatttat 138  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  21848066 tctgaatgaataaaagtgtgtgcaagagtctctatttat 21848104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 31262494 - 31262430
Alignment:
Q  83 ccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||||  ||| ||||| |||||||||||| |||| | || |||||||||||||||||||||    
T  31262494 ccttgtaccgttagatttctaaatgaataaaagagtgtacaagtgtctctatttatagtgcatca 31262430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 18235918 - 18235968
Alignment:
Q  97 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||| ||||||||||||||||| | ||||||||||| |||| |||||||    
T  18235918 ttttctaaatgaataaaagtgtgtacaagagtctctatctataatgcatca 18235968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 18819237 - 18819131
Alignment:
Q  60 gaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaat 159  Q
    |||||| |||| ||||||| |  |||||||||  ||| ||||||||| |||||||| || ||| || ||||||||||||| | ||||| | ||||| | |    
T  18819237 gaagctttgatgtttgaccattgccttgtaccgttagctttctgaataaataaaagagtttgcaagggtctctatttataatacatcattacttaggagt 18819138  T
Q  160 taagaga 166  Q
    |||||||    
T  18819137 taagaga 18819131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 17152623 - 17152534
Alignment:
Q  127 gtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaaaact 216  Q
    ||||||||||||||| ||||  | |||| | ||||| ||||||||| |||||||||| ||| |||||| |||  ||| | ||||||||||    
T  17152623 gtctctatttatagttcatcgttacttaatgattaatagatgagaactgagctttttcctctgatccaacttgaaaaacaagctaaaact 17152534  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 31274365 - 31274320
Alignment:
Q  102 tgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||||||||| | |||| || |||||||||||||||||||||    
T  31274365 tgaatgaataaaagagagtgcaagggtctctatttatagtgcatca 31274320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 13802172 - 13802128
Alignment:
Q  97 ttttctgaatgaataaaagtgtgtgccagagtctctatttatagt 141  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||    
T  13802172 ttttctgaatgaataaaagtctgtacaagattctctatttatagt 13802128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 17884134 - 17884202
Alignment:
Q  73 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagt 141  Q
    ||||||||  |||||||| | ||| ||||| ||||||||||||| ||||| |  |||||||||||||||    
T  17884134 ttgacccttgccttgtactactagctttctaaatgaataaaagtatgtgcaatggtctctatttatagt 17884202  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 7742439 - 7742537
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttag 155  Q
    ||||||||| |||| |||||||||  |||||||||| ||  ||| ||||||| |||||| |||||| || ||||||||||||| ||||||| |||||||    
T  7742439 cttgaagctttgatgtttgacccttgccttgtaccactaactttttgaatgattaaaagagtgtgcaagggtctctatttataatgcatcattgcttag 7742537  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 19763413 - 19763508
Alignment:
Q  24 gagagaacaagaggaggaggaa-accctctgccgcttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgt 120  Q
    |||||||||||||||||| ||| | ||||||||  |||||||| |||| |||||||||  |||||||||| ||| ||| |||||||||||||| ||||    
T  19763413 gagagaacaagaggaggatgaagatcctctgcc--ttgaagctttgatgtttgacccttgccttgtaccactagctttttgaatgaataaaagagtgt 19763508  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 17695006 - 17695096
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    ||||||||| |||||||| | |||  ||||||||   ||  ||| |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  17695006 cttgaagctctgatatttaagccttgccttgtacatctaactttttgaatgaataaaagtgcgtgcaagactctctatttatagtgcatca 17695096  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 18178740 - 18178610
Alignment:
Q  16 ataccttagagagaacaagaggaggaggaa-accctctgccgcttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaa 114  Q
    ||||| |||||||||||||||||||| ||| | ||||  ||  || ||||| |||| ||||||| |  |||||||||| ||| ||| |||||||||||||    
T  18178740 ataccctagagagaacaagaggaggatgaagatcctccacc--tttaagctctgatgtttgaccattgccttgtaccattagctttttgaatgaataaaa 18178643  T
Q  115 gtgtgtgccagagtctctatttatagtgcatca 147  Q
      |||||| || ||||||||| ||| |||||||    
T  18178642 aagtgtgcaagggtctctattgatattgcatca 18178610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 24846670 - 24846613
Alignment:
Q  83 ccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatag 140  Q
    ||||||||||  | ||||||||||||||||||||| |||| ||||| |||||||||||    
T  24846670 ccttgtaccaccaattttctgaatgaataaaagtgcgtgcaagagtgtctatttatag 24846613  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 16622218 - 16622338
Alignment:
Q  83 ccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagctttt 182  Q
    ||||| |||| ||| ||| ||||| ||||||||| ||||| |||||||||||||||| || || | | |||||   |||||||  || || |||||||||    
T  16622218 ccttgaaccactagctttatgaataaataaaagtatgtgcaagagtctctatttataatgtatgattacttagagtttaagaggagaaaagtgagctttt 16622317  T
Q  183 ttctccgatccagctttgaaa 203  Q
    | | |||||||||||| ||||    
T  16622318 tgcaccgatccagcttagaaa 16622338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 20695174 - 20695100
Alignment:
Q  73 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    ||||||||  |||| ||||| ||| ||||||||||||| |||  || ||| |||||||||||||||||| |||||    
T  20695174 ttgacccttgccttctaccactagctttctgaatgaatgaaaaggtttgcaagagtctctatttatagtacatca 20695100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 22755483 - 22755442
Alignment:
Q  98 tttctgaatgaataaaagtgtgtgccagagtctctatttata 139  Q
    |||||||||||||||||  |||||| ||||||||||||||||    
T  22755483 tttctgaatgaataaaatagtgtgcaagagtctctatttata 22755442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 18894755 - 18894866
Alignment:
Q  110 taaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagc 209  Q
    ||||||||||||| |||||||||||||||| ||| ||| | ||| || ||||||| |||| ||||  ||||||| |||||||||||||| |||  | |||    
T  18894755 taaaagtgtgtgcaagagtctctatttata-tgcttcattacttggtgattaagaaatgaaaaat-tgctttttcctccgatccagcttggaagacaagc 18894852  T
Q  210 taaaactgcgtttt 223  Q
    ||||||||| ||||    
T  18894853 taaaactgcatttt 18894866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 27460468 - 27460570
Alignment:
Q  94 tagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatcc 193  Q
    |||||||||||| ||||||||| |||||  || |||||||||||||||| |||| | |||||   |||||||| || || | |||||||| | || ||||    
T  27460468 tagttttctgaaagaataaaagagtgtgtaagggtctctatttatagtggatcattacttaggggttaagagaagaaaactaagctttttccaccaatcc 27460567  T
Q  194 agc 196  Q
    |||    
T  27460568 agc 27460570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 34533240 - 34533109
Alignment:
Q  7 tcgaagaatataccttagagagaacaagaggaggaggaa-accctctgccgcttgaagctatgatatttgaccctctccttgtaccaatagttttctgaa 105  Q
    ||||| || ||||| |||||||||||||||||||| ||| | ||||| ||  ||||| |||||||  |||||||   | ||| ||   ||||||||| ||    
T  34533240 tcgaaaaacataccctagagagaacaagaggaggatgaagatcctcttcc--ttgaaactatgatgcttgacccgtgcattgaactgttagttttctaaa 34533143  T
Q  106 tgaataaaagtgtgtgccagagtctctatttata 139  Q
    ||||||| | ||||||| ||||||||||||||||    
T  34533142 tgaataagaatgtgtgcaagagtctctatttata 34533109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 11475417 - 11475335
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttata 139  Q
    ||||||||| ||||  |||| |||  ||||| |||  ||| |||||||||||||||||| |||||| ||||||||||||||||    
T  11475417 cttgaagctttgatgcttgatccttgccttgcaccgctagctttctgaatgaataaaagagtgtgcaagagtctctatttata 11475335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 19285657 - 19285568
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    |||||||||  ||| |||||||||  |||||||||| ||| |||||||||||||||||| |||| | |  |||| ||||||||||||||||    
T  19285657 cttgaagctccgatgtttgacccttgccttgtaccattagctttctgaatgaataaaagagtgt-caaaggtctttatttatagtgcatca 19285568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 33578317 - 33578227
Alignment:
Q  57 cttgaagctatgatatttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatca 147  Q
    ||||||||| | || ||||||| |  ||||| |||  ||| ||||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  33578317 cttgaagctctaatgtttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatagtgtatca 33578227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 26419270 - 26419165
Alignment:
Q  98 tttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagct 197  Q
    |||||||||||||| ||  ||||   || ||||||||||||||||||||| ||| || | ||||||||||||||  || | ||||| |||| ||||||||    
T  26419270 tttctgaatgaatataatagtgtaaaagggtctctatttatagtgcatcattgcgtaatgattaagagatgagatctgtgatttttcctccaatccagct 26419171  T
Q  198 ttgaaa 203  Q
    | ||||    
T  26419170 tagaaa 26419165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 26298311 - 26298250
Alignment:
Q  84 cttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 145  Q
    |||||| || ||| ||||| ||| |||||||| |||||| |||||||||||||||| |||||    
T  26298311 cttgtagcactagctttctcaattaataaaagagtgtgcaagagtctctatttataatgcat 26298250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 23907882 - 23907938
Alignment:
Q  98 tttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcatcaatgctta 154  Q
    |||| ||| |||||||||||| ||| || ||||||||||||| ||||||| ||||||    
T  23907882 tttccgaaagaataaaagtgtatgcaagggtctctatttatactgcatcattgctta 23907938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 12811 - 12749
Alignment:
Q  83 ccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 145  Q
    |||||||||  ||| ||||||||||||||||   |||||| || |||||||||||||||||||    
T  12811 ccttgtaccgctagctttctgaatgaataaactggtgtgcaagggtctctatttatagtgcat 12749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 5569762 - 5569806
Alignment:
Q  94 tagttttctgaatgaataaaagtgtgtgccagagtctctatttata 139  Q
    ||||||||||||||||||||||||||||  || |||||||||||||    
T  5569762 tagttttctgaatgaataaaagtgtgtg-aagggtctctatttata 5569806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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