View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_40 (Length: 325)
Name: NF19782_low_40
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 21120668 - 21120977
Alignment:
| Q |
1 |
tatagtgttgagtttatgcaaagacgaaacaaatgaaattatccataaattagctaaggttgtttaaacaattttatacaaattatagtgttgagtttct |
100 |
Q |
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| T |
21120668 |
tatagtgttgagtttatgcaaagacgaaacaaatgaaattatccataaattagctaaggttgtttaaacaattttatacaaattatagtgttgagtttct |
21120767 |
T |
|
| Q |
101 |
gcaaagacaacaattgaaattgtccataaactagttaagacagttaatttttattttattttaagctaaattagcaaactcaaattggcattggaaagta |
200 |
Q |
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| T |
21120768 |
gcaaagacaacaattgaaattgtccataaactagttaagacagttaatttttattttattttaagctaaattagccaacccaaattggcattggaaagta |
21120867 |
T |
|
| Q |
201 |
gaatctgaaaccttgaggagaagcacactcctaagtccaagctaataccatcatgccaactcaactgggttagctaagattgttacattgtcggctagtt |
300 |
Q |
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| T |
21120868 |
gaatctgaaaccttgaggagaagcacactcctaagtccaagctaataccatcatgccaactcaactgggttagctaagattgttacattgtcggctagtt |
21120967 |
T |
|
| Q |
301 |
tctagatatt |
310 |
Q |
| |
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|||||||||| |
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| T |
21120968 |
tctagatatt |
21120977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 40284000 - 40284060
Alignment:
| Q |
210 |
accttgaggagaagcacactcctaagt-ccaagctaataccatcatgccaactcaactggg |
269 |
Q |
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| T |
40284000 |
accttgaggagatgcacactcccaagtcccaagccaataccatcatgccaacccaagtggg |
40284060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 43590966 - 43590906
Alignment:
| Q |
213 |
ttgaggagaagcacactcctaagtcc-aagctaataccatcatgccaactcaactgggtta |
272 |
Q |
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|||||||| |||||||||| |||||| |||| ||||||| || |||||| ||||||||||| |
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| T |
43590966 |
ttgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtta |
43590906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 10338183 - 10338239
Alignment:
| Q |
205 |
ctgaaaccttgaggagaagcacactcctaagt-ccaagctaataccatcatgccaac |
260 |
Q |
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|||| ||||||||||| |||||||||||| || |||||| ||||||| ||||||||| |
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| T |
10338183 |
ctgagaccttgaggaggagcacactcctaggtcccaagccaataccaccatgccaac |
10338239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 23052532 - 23052588
Alignment:
| Q |
205 |
ctgaaaccttgaggagaagcacactcctaagt-ccaagctaataccatcatgccaac |
260 |
Q |
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|||| |||||||||||||||||||||| |||| |||||| ||||||| || |||||| |
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| T |
23052532 |
ctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggccaac |
23052588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 52116798 - 52116858
Alignment:
| Q |
213 |
ttgaggagaagcacactcctaagtcc-aagctaataccatcatgccaactcaactgggtta |
272 |
Q |
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|||||||| |||||||||| |||||| |||| ||||||| || |||||| ||||||||||| |
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| T |
52116798 |
ttgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtta |
52116858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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