View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19782_low_45 (Length: 307)
Name: NF19782_low_45
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 4982957 - 4983239
Alignment:
| Q |
14 |
actatattgtttcaatgcatttgatatcatatcactctcttcgggacttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4982957 |
actatattgtttcaatgcatttgatatcatatcactctcttcgggacttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaaga |
4983056 |
T |
|
| Q |
114 |
tttgctacaaatagaccaccttcaacaattgtgtcaaaacttgaagagacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgtta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4983057 |
tttgctacaaatagaccaccttcaacaattgtgtcaaaacttgaagagacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgtta |
4983156 |
T |
|
| Q |
214 |
gagtggagggatttgagacaggagtaagtgaacaactcaccattgatacagaaatttttgaagttgcatcttcattttatatt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4983157 |
gagtggagggatttgagacaggagtaagtgaacaactcaccattgatacagaaatttttgaagttgcatcttcattttatatt |
4983239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 296
Target Start/End: Original strand, 4985359 - 4985628
Alignment:
| Q |
27 |
aatgcatttgatatcatatcactctcttcgggacttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaagatttgctacaaata |
126 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| |||||||||| |||||||||| |||| || |||| || |||| |||||||||||| ||||||| | |
|
|
| T |
4985359 |
aatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgtttgagaaaggtatgagtaaaagacatcatgcaagattttctacaaaaa |
4985458 |
T |
|
| Q |
127 |
gaccaccttcaacaattgtgtcaaaacttgaagagacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgttagagtggagggatt |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||| | |
|
|
| T |
4985459 |
gaccaccttcaaatgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatgggattgttagattggagggaat |
4985558 |
T |
|
| Q |
227 |
tgagacaggagtaagtgaacaactcaccattgatacagaaatttttgaagttgcatcttcattttatatt |
296 |
Q |
| |
|
||||||| | || ||||||||||| || |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
4985559 |
tgagacaaggatagttgaacaactcagtatagatatagaaatttttgaagttacatcttcattttatatt |
4985628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 3293620 - 3293588
Alignment:
| Q |
51 |
tcttcgggacttgatctttcgggtttgtttgaa |
83 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
3293620 |
tcttcgggatttgatctttcgggtttgtttgaa |
3293588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University