View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_47 (Length: 307)

Name: NF19782_low_47
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_47
NF19782_low_47
[»] chr2 (11 HSPs)
chr2 (7-307)||(11144937-11145237)
chr2 (78-307)||(11148217-11148446)
chr2 (172-279)||(10794373-10794480)
chr2 (79-282)||(11170867-11171070)
chr2 (89-256)||(11135671-11135838)
chr2 (90-232)||(11154755-11154897)
chr2 (193-282)||(11109287-11109376)
chr2 (79-282)||(11192278-11192481)
chr2 (7-55)||(11149122-11149170)
chr2 (84-144)||(11198285-11198345)
chr2 (77-155)||(11117878-11117956)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 11145237 - 11144937
Alignment:
Q  7 atagatcacattatttacattatgattataacattagcataatacaaatcatttgcaagtagaaggtaaagtatacatacttgaacaaaacagtcatgga 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11145237 atagattacattatttacattatgattataacattagcataatacaaatcatttacaagtagaaggtaaagtatacatacttgaacaaaacagtcatgga 11145138  T
Q  107 agtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaatggaactaacatttggacaagttttgct 206  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11145137 agtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaatggaactaacatttggacaagttttgct 11145038  T
Q  207 ataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaaacacaactacagtacagcacaaagctattgctacagcacgaagagagttc 306  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||| | | ||| || | |||||||||||||||||||||||||||||||||    
T  11145037 ataaaaggatggattaagttgtgcattggaagggaaaggtaacactccaaacaaagccacaataaaacacaaagctattgctacagcacgaagagagttc 11144938  T
Q  307 a 307  Q
    |    
T  11144937 a 11144937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 78 - 307
Target Start/End: Complemental strand, 11148446 - 11148217
Alignment:
Q  78 tatacatacttgaacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggaca 177  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||  |||||||||||| |||| ||||||||||  ||||||||||||| || |||    
T  11148446 tatacatacttgaacaaaacagtcatgaaagtgaagcctgacaagactaccaagcatacgaggatctttcttagaaacacttcttatgacttcacgaaca 11148347  T
Q  178 atggaactaacatttggacaagttttgctataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaaacacaactacagtacagcaca 277  Q
    ||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||| ||| |||||||||    
T  11148346 atggaactaacatttggacaagtgttcctgtaaaaggatggatcaagttgtgcatttgaagagaagggtaaccctccaagcacaaccacaatacagcaca 11148247  T
Q  278 aagctattgctacagcacgaagagagttca 307  Q
    |||||||||||||||||||||| |||||||    
T  11148246 aagctattgctacagcacgaagggagttca 11148217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 10794373 - 10794480
Alignment:
Q  172 cggacaatggaactaacatttggacaagttttgctataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaaacacaactacagtac 271  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||| ||| |||||||||||| | | |||||||||||||||||||||| || |||    
T  10794373 cggacaatggaattaagatttggacaagttttgctataaaaggctggatcaagctgtgcatttgaacataaaggtaacactccaaacacaactgcaatac 10794472  T
Q  272 agcacaaa 279  Q
    | ||||||    
T  10794473 aacacaaa 10794480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 282
Target Start/End: Complemental strand, 11171070 - 11170867
Alignment:
Q  79 atacatacttgaacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaa 178  Q
    |||| |||||||||||| || ||||||||||||||||| |  |  || ||||| ||||||| ||||||||||||||| |||||||  ||||| || ||||    
T  11171070 atacttacttgaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtcttagaaacatttcttagtacttcacgaacaa 11170971  T
Q  179 tggaactaacatttggacaagttttgctataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaaacacaactacagtacagcacaa 278  Q
    |||||  |||||| |||||||| |  ||||| |||||   || ||||||||||||||| ||||  |||||| |||||| |||||||||   |||||||||    
T  11170970 tggaatgaacattaggacaagtgtccctatagaaggaattatcaagttgtgcatttgatgagaagggtaaccctccaagcacaactactacacagcacaa 11170871  T
Q  279 agct 282  Q
    ||||    
T  11170870 agct 11170867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 11135838 - 11135671
Alignment:
Q  89 gaacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaatggaactaac 188  Q
    |||||||||||||||| |||||||| || || || || |||||||| |||| ||| |||||||| ||||| ||||||||||| || | |||||||  |||    
T  11135838 gaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatgcgaggatcagtcttagagacgttccttatgacttcacgaataatggaatgaac 11135739  T
Q  189 atttggacaagttttgctataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaa 256  Q
     ||||||||||| |  ||||| ||||| |||| ||||||||||| ||| ||||  |||||| ||||||    
T  11135738 ctttggacaagtgtccctatagaaggaaggatcaagttgtgcatctgaggagaagggtaaccctccaa 11135671  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 11154897 - 11154755
Alignment:
Q  90 aacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaatggaactaaca 189  Q
    ||||||||||||||| ||||||||||| || ||||| |||||||| ||   ||||||||||||||| ||| |||  || |  |  |||||||||||||||    
T  11154897 aacaaaacagtcatgaaagtgaagcctgacgaggctagcaagcatgcgttgatctgtcttagaaacatttgttaatacattgctaacaatggaactaaca 11154798  T
Q  190 tttggacaagttttgctataaaaggatggattaagttgtgcat 232  Q
     |||||||||||||||| ||||| |  ||| ||||||||||||    
T  11154797 gttggacaagttttgctgtaaaaagtgggactaagttgtgcat 11154755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 11109376 - 11109287
Alignment:
Q  193 ggacaagttttgctataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaaacacaactacagtacagcacaaagct 282  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||||  ||||   ||||||||||||| ||   |||||||||||||    
T  11109376 ggacaagttttgccataaaagtatggatcaagttgtgcatttgaagagaagggtagtcctccaaacacaaccactacacagcacaaagct 11109287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 282
Target Start/End: Original strand, 11192278 - 11192481
Alignment:
Q  79 atacatacttgaacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaa 178  Q
    |||||||||||||||||||| ||||| || ||||||||||  |  || ||||| ||||||| |||||||| ||||||||||  || ||      ||||||    
T  11192278 atacatacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgtttgctaagatactttggacaa 11192377  T
Q  179 tggaactaacatttggacaagttttgctataaaaggatggattaagttgtgcatttgaagagacaggtaacactccaaacacaactacagtacagcacaa 278  Q
    ||||| | ||||||||||| || |   |||| |||   |||| ||||||||||||||||||||  || ||| |||||| |||||| ||   |||||||||    
T  11192378 tggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcacaaccactacacagcacaa 11192477  T
Q  279 agct 282  Q
    ||||    
T  11192478 agct 11192481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 11149170 - 11149122
Alignment:
Q  7 atagatcacattatttacattatgattataacattagcataatacaaat 55  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  11149170 atagatcacataatttacattatgattataacaatagcataataaaaat 11149122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 11198345 - 11198285
Alignment:
Q  84 tacttgaacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatct 144  Q
    ||||||||||||||| ||||| ||||||||||||||||| || ||||  ||||||||||||    
T  11198345 tacttgaacaaaacaatcatgaaagtgaagcctaacaagactagcaaaaatacgagtatct 11198285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 11117956 - 11117878
Alignment:
Q  77 gtatacatacttgaacaaaacagtcatggaagtgaagcctaacaaggcttgcaagcatacgagtatctgtcttagaaac 155  Q
    |||||||||||||||| ||||| ||||| |||||||||||||  |  || ||| |||| |||| ||| |||||||||||    
T  11117956 gtatacatacttgaacgaaacaatcatgaaagtgaagcctaatgatactcgcaggcattcgagaatcagtcttagaaac 11117878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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