View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_5 (Length: 590)

Name: NF19782_low_5
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_5
NF19782_low_5
[»] chr2 (3 HSPs)
chr2 (15-577)||(7803214-7803771)
chr2 (306-379)||(4690285-4690358)
chr2 (310-358)||(18570971-18571019)
[»] chr5 (3 HSPs)
chr5 (489-559)||(43026288-43026357)
chr5 (312-373)||(38749560-38749621)
chr5 (319-379)||(22423803-22423863)
[»] chr3 (6 HSPs)
chr3 (489-559)||(925981-926050)
chr3 (310-357)||(12704670-12704717)
chr3 (487-539)||(44702794-44702845)
chr3 (300-353)||(7948947-7949001)
chr3 (312-373)||(11093571-11093632)
chr3 (319-391)||(16192729-16192801)
[»] chr1 (1 HSPs)
chr1 (319-421)||(16164264-16164366)
[»] chr8 (2 HSPs)
chr8 (319-422)||(11927034-11927137)
chr8 (317-417)||(1925994-1926093)
[»] chr4 (2 HSPs)
chr4 (319-401)||(38148694-38148776)
chr4 (487-559)||(5454475-5454546)
[»] chr7 (3 HSPs)
chr7 (312-379)||(1885574-1885641)
chr7 (340-410)||(6630872-6630942)
chr7 (312-421)||(38134355-38134464)
[»] chr6 (1 HSPs)
chr6 (319-371)||(24115846-24115898)


Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Complemental strand, 7803771 - 7803214
Alignment:
Q  15 atgaatgaaactaaattaaaaaatattattaaaatgagtgaagtgattacaaagagtaatatcaagcctttatataagctaactactactagtaataaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||    
T  7803771 atgaatgaaactaaattaaaaaatattattaaaatgagtgaagtgattacaaagagtaatatcaagcctttatataagctaactgttactagtaattaac 7803672  T
Q  115 caactagccagaaagtgttcctaacacttccagctaaacatatcaaaacaaagagaaatgtgatagaaatacatcagctaaaaatgccatgaaggtagta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7803671 caactagccagaaagtgttcctaacacttccagctaaacatatcaaaacaaagagaaatgtgatagaaatacatcagctaaaaatgccatgaaggtagta 7803572  T
Q  215 taagccaacatatcaaagtcataaatcataatgcttaaccacttgatagaagctacaaagcatgtactcagacaccaaacatgatacagacataccaaca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  7803571 taagccaacatatcaaagtcataaatcataatgcttaaccacttgatagaagctacgaagcatgtactcagacaccaaacatgataaagacataccaaca 7803472  T
Q  315 cggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgctt 414  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||      ||||||||||||||||||||||| |||||||||    
T  7803471 ccgataatagtttgaaaagatgacataattcaatataatcatatacgttggtgtcgtgttg------gacacaacacgtatccgacatcaggacacgctt 7803378  T
Q  415 aatccgatagaagcaagtacaccaatcaatgcttaaccagcataagacagaaactaac-nnnnnnntatatcaatgtttacccatccattatgacagacc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| |    
T  7803377 aatccgatagaagcaagtacaccaatcaatgcttaaccagcataagacagaaactaacaaaaaaaaaatatcaatgtttacccatccattatgacagatc 7803278  T
Q  514 aaagctaaaatcaaaccattgaaactggtatcaacatataagcaagcatatcaccaaataattg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7803277 aaagctaaaatcaaaccattgaaactggtatcaacatataagcaagcatatcaccaaataattg 7803214  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 4690285 - 4690358
Alignment:
Q  306 ataccaacacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgt 379  Q
    |||| ||||| ||||||| ||||| || || |||||||| |||| |||||||||||||  ||||||||| ||||    
T  4690285 atacaaacactgataataatttgagaaaataacataatttaatacaatcatatatgttagtgtcgtgttcgtgt 4690358  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 18570971 - 18571019
Alignment:
Q  310 caacacggataatagtttgaaaagatgacataattcaatataatcatat 358  Q
    |||||| ||||||| ||||| || ||||||||||||||| |||||||||    
T  18570971 caacaccgataataatttgagaaaatgacataattcaatgtaatcatat 18571019  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 559
Target Start/End: Original strand, 43026288 - 43026357
Alignment:
Q  489 gtttacccatccattatgacagaccaaagctaaaatcaaaccattgaaactggtatcaacatataagcaag 559  Q
    ||||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||| | |||||||    
T  43026288 gtttaaccatccattatgacagaccaacgctaacatc-aaccattgaaactgatatcaacagaaaagcaag 43026357  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 38749621 - 38749560
Alignment:
Q  312 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgt 373  Q
    |||| ||||||| |||||||| ||||||||||||||| |||| |||| ||||| ||| ||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgt 38749560  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 22423863 - 22423803
Alignment:
Q  319 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgt 379  Q
    ||||| ||||| || || ||||||||||||||||| |||||||| | |||||||| |||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgt 22423803  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 559
Target Start/End: Complemental strand, 926050 - 925981
Alignment:
Q  489 gtttacccatccattatgacagaccaaagctaaaatcaaaccattgaaactggtatcaacatataagcaag 559  Q
    ||||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||| | |||||||    
T  926050 gtttaaccatccattatgacagaccaacgctaacatc-aaccattgaaactgatatcaacagaaaagcaag 925981  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 12704717 - 12704670
Alignment:
Q  310 caacacggataatagtttgaaaagatgacataattcaatataatcata 357  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  12704717 caacacggataataatttgaaaaaatgacataattcaatgtaatcata 12704670  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 44702794 - 44702845
Alignment:
Q  487 atgtttacccatccattatgacagaccaaagctaaaatcaaaccattgaaact 539  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||    
T  44702794 atgtttaaccatccattatgacagaccaacgctaacatc-aaccattgaaact 44702845  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 7948947 - 7949001
Alignment:
Q  300 acagacataccaacacggataatagtttga-aaagatgacataattcaatataat 353  Q
    ||||||||| |||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  7948947 acagacatatcaacaccgataatagtttgagaaaaatgacataattcaatgtaat 7949001  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 11093571 - 11093632
Alignment:
Q  312 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgt 373  Q
    |||| ||||||| |||||||| ||||||||||||||  |||||| || ||||| ||||||||    
T  11093571 acactgataataatttgaaaaaatgacataattcaaagtaatcagatgtgttggtgtcgtgt 11093632  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 16192801 - 16192729
Alignment:
Q  319 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacac 391  Q
    ||||| ||||| || || |||||||||| | |||| |||| |||||||||||||| ||||| |||||| ||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacacgacac 16192729  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 16164366 - 16164264
Alignment:
Q  319 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgcttaatc 418  Q
    ||||| |||||||| || |||||||| ||| |||| |||| |||   ||||||||||||||| ||| |||||||| ||||||| || ||||||| |||||    
T  16164366 taataatttgaaaaaatcacataatttaatgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacaccaggacacgcctaatc 16164267  T
Q  419 cga 421  Q
    |||    
T  16164266 cga 16164264  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 422
Target Start/End: Complemental strand, 11927137 - 11927034
Alignment:
Q  319 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgcttaatc 418  Q
    ||||| ||||| || || |||||||||| | |||| |||| ||| | |||||||||||||| | |||| ||| |||||| ||||| |||||||| |||||    
T  11927137 taataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacgacatgtatccaacatcgagacacgcctaatc 11927038  T
Q  419 cgat 422  Q
    ||||    
T  11927037 cgat 11927034  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 417
Target Start/End: Original strand, 1925994 - 1926093
Alignment:
Q  317 gataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacgcttaa 416  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||| | | | |||| |||   |||||| | |||||||||||| | |||||| |||||    
T  1925994 gataatagtttgaaaa-aggacataattcaatgtaatcatatatgtcggtatagtgtcggtaccagacacgatacgtatccgacaccgagacacacttaa 1926092  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 38148776 - 38148694
Alignment:
Q  319 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgaca 401  Q
    ||||||||||| || || |||||||||| | ||||  || |||| ||||||||||||||||| ||||| ||||||||| ||||    
T  38148776 taatagtttgagaaaatcacataattcagtgtaattttaaatgtcgatgtcgtgttggtgttggacacgacacgtatctgaca 38148694  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 559
Target Start/End: Complemental strand, 5454546 - 5454475
Alignment:
Q  487 atgtttacccatccattatgacagaccaaagctaaaatcaaaccattgaaactggtatcaacatataagcaag 559  Q
    ||||||| |||||||||||||  |||||| ||||| ||||| |||||||||||| |||||||| | |||||||    
T  5454546 atgtttaaccatccattatgatggaccaacgctaacatcaa-ccattgaaactgatatcaacagaaaagcaag 5454475  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 1885574 - 1885641
Alignment:
Q  312 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgt 379  Q
    |||||||||| | |||||||| ||||||||||||||| |||||| |  ||| | ||||||||||||||    
T  1885574 acacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgt 1885641  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 6630942 - 6630872
Alignment:
Q  340 taattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacac 410  Q
    ||||||| | |||| |||| ||| ||||||||||||||||  ||||||||||||  |||||| ||||||||    
T  6630942 taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacaccaagacac 6630872  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 421
Target Start/End: Complemental strand, 38134464 - 38134355
Alignment:
Q  312 acacggataatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgtgttggtgttagacacaacacgtatccgacatcaagacacg 411  Q
    |||| ||||||| ||||| || ||||||||||||||| ||||||||| ||| | | || ||| |||||| ||| | | | |||| |||||||  ||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggtctcatgtgggtgttggactcgataagtattcgacatcgggacacg 38134365  T
Q  412 cttaatccga 421  Q
    | ||||||||    
T  38134364 cctaatccga 38134355  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 24115898 - 24115846
Alignment:
Q  319 taatagtttgaaaagatgacataattcaatataatcatatatgttgatgtcgt 371  Q
    ||||| ||| |||| || ||||||||||||||||| |||||||||| ||||||    
T  24115898 taataatttcaaaaaatcacataattcaatataattatatatgttggtgtcgt 24115846  T

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