View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_58 (Length: 260)
Name: NF19782_low_58
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 8926735 - 8926500
Alignment:
| Q |
18 |
gattttatatgtgtgactttagaaataattataatagtaannnnnnnnacgctgatggtgtatatgaattaaatactaaatatatattttaacaaaacat |
117 |
Q |
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| T |
8926735 |
gattttatatgtgtgactttagaaataattataatagtaattttttttacgctgacagtgtatatgaattaaatactaaatatatattttaacaaaacat |
8926636 |
T |
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| Q |
118 |
taaaatatgtgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926635 |
taaaatatgtgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatca |
8926536 |
T |
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| Q |
218 |
tttatttctgactgaacacactccaaacctttgctt |
253 |
Q |
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| T |
8926535 |
tttatttctgactgaacacactccaaacctttgctt |
8926500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 55523373 - 55523247
Alignment:
| Q |
127 |
tgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttct |
226 |
Q |
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||||||||| || | ||||||||| ||||||||||| || ||| | |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
55523373 |
tgacctgtagtcatgatcaagatcagggatctctgatatgttaaagttaggaaggtggcgcaaaaagaaagtgctttcccaatccaagtcattaatttca |
55523274 |
T |
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| Q |
227 |
gactgaacacactccaaacctttgctt |
253 |
Q |
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| T |
55523273 |
gactgagcaaactctaaacctttgctt |
55523247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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