View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_67 (Length: 249)

Name: NF19782_low_67
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_67
NF19782_low_67
[»] chr3 (6 HSPs)
chr3 (12-191)||(43407597-43407778)
chr3 (57-114)||(43978628-43978685)
chr3 (56-119)||(37626644-37626707)
chr3 (57-111)||(23161955-23162009)
chr3 (78-126)||(44655082-44655130)
chr3 (23-99)||(54328762-54328838)
[»] chr1 (5 HSPs)
chr1 (30-119)||(11199966-11200055)
chr1 (57-119)||(50391944-50392006)
chr1 (31-119)||(11766004-11766092)
chr1 (57-119)||(43834538-43834600)
chr1 (30-119)||(38637553-38637642)
[»] chr5 (3 HSPs)
chr5 (56-119)||(27856172-27856235)
chr5 (30-107)||(28296053-28296130)
chr5 (79-119)||(18415625-18415665)
[»] chr8 (2 HSPs)
chr8 (30-119)||(5073025-5073114)
chr8 (58-110)||(11806742-11806794)
[»] chr2 (3 HSPs)
chr2 (57-119)||(19548187-19548249)
chr2 (57-119)||(10066574-10066636)
chr2 (36-120)||(8252621-8252705)
[»] chr7 (3 HSPs)
chr7 (65-115)||(27938807-27938857)
chr7 (60-119)||(7631261-7631321)
chr7 (59-111)||(25078155-25078207)
[»] scaffold0548 (1 HSPs)
scaffold0548 (57-119)||(4121-4183)
[»] chr4 (2 HSPs)
chr4 (57-119)||(11307632-11307694)
chr4 (80-120)||(27000895-27000935)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 43407778 - 43407597
Alignment:
Q  12 aagaatgagtcaatacttcaggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttat--ata 109  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  43407778 aagaatgagtcaatacttcaggaccacaagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatata 43407679  T
Q  110 tccaacatttagttcattcgaatcgctgtgaaacttagtaactcatacttgaaatcatcaaatgtatatcgtttgggttaga 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  43407678 tccaacatttagttcattcgaatcgttgtgaaacttagtaactcatacttgaaatcatcaaatgtatatcttttcggttaga 43407597  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 43978628 - 43978685
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaa 114  Q
    ||||||||||||||||||| | || |||||||||||||| ||| ||||||||||||||    
T  43978628 atctccacccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaa 43978685  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 37626707 - 37626644
Alignment:
Q  56 gatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||||||| |||| |||| | |||||||||||||  | |||| |||||||||||||||||||    
T  37626707 gatctccacctaaaatcttaagacattaggtatatgtatgacctctcttatatatccaacattt 37626644  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 23162009 - 23161955
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatc 111  Q
    |||||||||||||| |||| | |||  |||||||||||||||| |||||||||||    
T  23162009 atctccacccaaaatcttaaggcatcgggtatatgagtcacctctcttatatatc 23161955  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 44655082 - 44655130
Alignment:
Q  78 tcattaggtatatgagtcacctttcttatatatccaacatttagttcat 126  Q
    ||||||| |||  ||||||||||||||||||||| ||||||||| ||||    
T  44655082 tcattagatattcgagtcacctttcttatatatctaacatttagctcat 44655130  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 54328762 - 54328838
Alignment:
Q  23 aatacttcaggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacct 99  Q
    |||||||||| |||| |||| | |||||| ||  |||||||||||||| |||| | | ||||||||||| |||||||    
T  54328762 aatacttcagaaccacaagagacggagacaccacatctccacccaaaatcttatggcgttaggtatatgggtcacct 54328838  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 11200055 - 11199966
Alignment:
Q  30 caggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||||| || | |||||||| ||  ||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||    
T  11200055 caggaccacaacagagggagacgccacatctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattt 11199966  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 50391944 - 50392006
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    ||||||| ||||||||||| | ||||||||||||||||||| | |||||||||||||||||||    
T  50391944 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 50392006  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 11766004 - 11766092
Alignment:
Q  31 aggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    ||||| |||||| |||||||| ||  ||||||||||||||||||| | ||||||||  ||  |||| || ||||||| |||||||||||    
T  11766004 aggactataagagagggagacgccacatctccacccaaaaccttaaggcattaggttaataggtcaactctcttataaatccaacattt 11766092  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 43834600 - 43834538
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    ||||||| | ||||||||| | ||||||||||||| ||| ||| |||||||||| ||||||||    
T  43834600 atctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 38637642 - 38637553
Alignment:
Q  30 caggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||| | |||| |||||||  ||| |||||||||||| |||||| | ||||||||||||  |||||||  |||||||  |||||||||    
T  38637642 caggactacaagagagggagatgccgcatctccacccaataccttaaggcattaggtatataggtcacctcacttatatggccaacattt 38637553  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 27856235 - 27856172
Alignment:
Q  56 gatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||| |||||||||||||||||||    
T  27856235 gatctccacccaaaactttaaggcattaggtatatgagccacctctcttatatatccaacattt 27856172  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 28296053 - 28296130
Alignment:
Q  30 caggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttata 107  Q
    |||||||| |||| |||||||| ||  ||||||||||||||||||| |  |||||||||||| ||||||| |||||||    
T  28296053 caggaccacaagagagggagacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctcttata 28296130  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 18415625 - 18415665
Alignment:
Q  79 cattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  18415625 cattaggtttatgagtctcctatcttatatatccaacattt 18415665  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 5073114 - 5073025
Alignment:
Q  30 caggaccataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||||| |||| ||||||||  |  ||||||||||||||||||| | ||||| ||||||||| | ||| |||||||||||||||||||    
T  5073114 caggaccacaagagagggagacgacacatctccacccaaaaccttaaggcattacgtatatgagacgcctctcttatatatccaacattt 5073025  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 11806794 - 11806742
Alignment:
Q  58 tctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatat 110  Q
    |||||||||||||||||| | ||  ||||||||| ||||||| ||||||||||    
T  11806794 tctccacccaaaaccttaaggcacaaggtatatgggtcacctctcttatatat 11806742  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 19548249 - 19548187
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    ||||||||||||||||||| | |||||| |||||| ||| ||| |||||||||||||||||||    
T  19548249 atctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 10066636 - 10066574
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    |||||||||||||| |||| | |||||||||||||  || ||| |||||||||||||||||||    
T  10066636 atctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 8252621 - 8252705
Alignment:
Q  36 cataagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattta 120  Q
    ||||||| |||| ||| ||  ||||||| ||||||| ||| | | ||||||||| |||| |||| ||||||||||||||||||||    
T  8252621 cataagagagggcgacaccacatctccatccaaaactttaaggcgttaggtatacgagttacctctcttatatatccaacattta 8252705  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 27938857 - 27938807
Alignment:
Q  65 ccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaac 115  Q
    ||||||||||| | | ||||||||||||||| |||||||||||||||||||    
T  27938857 ccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaac 27938807  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 7631261 - 7631321
Alignment:
Q  60 tccacccaaaaccttacgtcattaggtatat-gagtcacctttcttatatatccaacattt 119  Q
    ||||||||||| |||| | |||||||||||| | ||| ||| |||||||||||||||||||    
T  7631261 tccacccaaaagcttaagccattaggtatatggggtctcctctcttatatatccaacattt 7631321  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 25078207 - 25078155
Alignment:
Q  59 ctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatc 111  Q
    ||||||||||||||||| | ||||| |||||||| |||| | |||||||||||    
T  25078207 ctccacccaaaaccttaagacattatgtatatgaatcacatctcttatatatc 25078155  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 4121 - 4183
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    ||||||||||||||| ||| | ||| ||||||||| ||| ||| ||| |||||||||||||||    
T  4121 atctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacattt 4183  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 11307632 - 11307694
Alignment:
Q  57 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatccaacattt 119  Q
    ||||||||||||||| ||| | ||| ||||||||| ||| ||| ||| |||||||||||||||    
T  11307632 atctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacattt 11307694  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 27000895 - 27000935
Alignment:
Q  80 attaggtatatgagtcacctttcttatatatccaacattta 120  Q
    ||||| |||||| |||| |||||||||||||||||||||||    
T  27000895 attagttatatgggtcatctttcttatatatccaacattta 27000935  T

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