View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_7 (Length: 554)

Name: NF19782_low_7
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_7
NF19782_low_7
[»] chr2 (9 HSPs)
chr2 (20-544)||(10605112-10605636)
chr2 (413-476)||(35928265-35928328)
chr2 (415-457)||(12749982-12750024)
chr2 (411-457)||(37449408-37449454)
chr2 (415-457)||(42173938-42173980)
chr2 (415-449)||(44460357-44460391)
chr2 (416-449)||(10547213-10547246)
chr2 (348-448)||(27309620-27309720)
chr2 (407-447)||(36300410-36300450)
[»] chr5 (9 HSPs)
chr5 (391-457)||(875714-875779)
chr5 (415-457)||(38346880-38346922)
chr5 (409-449)||(4787938-4787978)
chr5 (394-454)||(40990978-40991038)
chr5 (357-449)||(41846726-41846818)
chr5 (415-450)||(41399571-41399606)
chr5 (369-450)||(34156681-34156762)
chr5 (390-447)||(40213865-40213922)
chr5 (415-483)||(41894409-41894477)
[»] chr7 (9 HSPs)
chr7 (348-457)||(30900046-30900155)
chr7 (415-457)||(23218621-23218663)
chr7 (390-457)||(30477955-30478022)
chr7 (407-490)||(38622872-38622955)
chr7 (407-457)||(2898910-2898960)
chr7 (413-457)||(1109348-1109392)
chr7 (393-457)||(2219504-2219568)
chr7 (416-476)||(25314032-25314092)
chr7 (407-447)||(40869547-40869587)
[»] chr6 (8 HSPs)
chr6 (412-457)||(31694720-31694765)
chr6 (390-457)||(9074112-9074179)
chr6 (415-457)||(21869881-21869923)
chr6 (407-457)||(26373101-26373151)
chr6 (356-434)||(9075213-9075291)
chr6 (415-457)||(18270616-18270658)
chr6 (413-457)||(9163774-9163818)
chr6 (405-457)||(33735426-33735478)
[»] chr4 (7 HSPs)
chr4 (407-457)||(34581597-34581647)
chr4 (416-457)||(2843583-2843624)
chr4 (407-455)||(18968295-18968343)
chr4 (349-456)||(30617204-30617310)
chr4 (407-445)||(20989522-20989560)
chr4 (413-451)||(32677007-32677045)
chr4 (407-447)||(47789191-47789231)
[»] chr1 (6 HSPs)
chr1 (415-477)||(15955891-15955953)
chr1 (377-498)||(43391497-43391618)
chr1 (390-442)||(6025946-6025998)
chr1 (409-448)||(17472847-17472886)
chr1 (407-448)||(3335396-3335437)
chr1 (407-447)||(1118936-1118976)
[»] scaffold0913 (1 HSPs)
scaffold0913 (408-457)||(1272-1321)
[»] scaffold0898 (1 HSPs)
scaffold0898 (408-457)||(4280-4329)
[»] chr8 (2 HSPs)
chr8 (409-454)||(22807100-22807145)
chr8 (411-451)||(13851005-13851045)
[»] chr3 (5 HSPs)
chr3 (407-448)||(8788967-8789008)
chr3 (391-447)||(24830165-24830221)
chr3 (411-481)||(51295676-51295746)
chr3 (415-457)||(54842197-54842239)
chr3 (411-448)||(2990979-2991016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (407-447)||(96695-96735)


Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 544
Target Start/End: Original strand, 10605112 - 10605636
Alignment:
Q  20 gacctcttccggctgaaattggaaacttaaaaaagctgacaaacttgtaagggagtttgaatattatttggattataatccataaaacttgatcaaacaa 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605112 gacctcttccggctgaaattggaaacttgaaaaagctgacaaacttgtaagggagtttgaatattatttggattataatccataaaacttgatcaaacaa 10605211  T
Q  120 tcctaataatgctctatttttacttttatcttacagacagcttattaattgtggtttcactggtcctatcccagatacaatagggaatctacaacggctt 219  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605212 tcctaacaatgctctatttttacttttatcttacagacagcttattaattgtggtttcactggtcctatcccagatacaatagggaatctacaacggctt 10605311  T
Q  220 gtattcctgtaagggttgttcactttatttttaaaagatatatgcgagcgcacacacaaggcctcatcatttggcttaattaataatccgttaaatgatg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |    
T  10605312 gtattcctgtaagggttgttcactttatttttaaaagatatatgcgagcgcacacacaaggtctcatcatttggcttaactaataatccgttaaatgacg 10605411  T
Q  320 gttacatttgaagcagtgctttaatcgtagattgcagaaaacagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10605412 gttacatttgaagcagtgctttaatcgtagattgcagaaaacagcggtctgttcagattctgctatgcaccagtgctataacaccgatatagccactatt 10605511  T
Q  420 tgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgctaggttatagcactgtagcgccgctatttaacaccattta 519  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10605512 tgacaagattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgctaggttatagcactgtagcgccgccatttaacaccattta 10605611  T
Q  520 tttgaagtcctttatacttcctttg 544  Q
    |||||||||||||||||||||||||    
T  10605612 tttgaagtcctttatacttcctttg 10605636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 35928328 - 35928265
Alignment:
Q  413 cactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattc 476  Q
    |||||||||||||||||||||| | || |||||||||| ||||||| || | || |||||||||    
T  35928328 cactatttgacaacattttgtactcaacagtgtatcacggaacaacaacaatttaatcaaattc 35928265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 12750024 - 12749982
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||||||||||||| |||||||||||  |||||||||    
T  12750024 ctatttgacaacattttgtactaaatagtgtaatacagaacaa 12749982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 457
Target Start/End: Complemental strand, 37449454 - 37449408
Alignment:
Q  411 gccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||||||||||||||||  | ||||||||||| |||||||    
T  37449454 gccactatttgacaacattttgtacgagatagtgtatcatagaacaa 37449408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 42173938 - 42173980
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  42173938 ctatttgacaacaatttgtattaaataacgtatcacagaacaa 42173980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 44460391 - 44460357
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatca 449  Q
    |||||||||||||||||||| ||||||||||||||    
T  44460391 ctatttgacaacattttgtactaaatagtgtatca 44460357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 10547213 - 10547246
Alignment:
Q  416 tatttgacaacattttgtattaaatagtgtatca 449  Q
    ||||||||||||||||||| ||||||||||||||    
T  10547213 tatttgacaacattttgtactaaatagtgtatca 10547246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 27309720 - 27309620
Alignment:
Q  348 agattgcagaaaacagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||| ||||| | |||| |||||| |||||| |||||  |||||||||| |||   |||| || ||||||||||||| ||| || ||||| ||||||    
T  27309720 agattgctgaaaatatcggtttgttcatattctgctatgctacagtgctatagcactattatatccgctatttgacaacactttatactaaatcgtgtat 27309621  T
Q  448 c 448  Q
    |    
T  27309620 c 27309620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 36300450 - 36300410
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    |||| ||||||||||||||||||||||| ||||||| ||||    
T  36300450 tatatccactatttgacaacattttgtactaaatagcgtat 36300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 875779 - 875714
Alignment:
Q  391 agtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||||||  ||||||| |||||||||||||||||| | ||||||||||||||| ||||||    
T  875779 agtgctataacaccactatagccgctatttgacaacattttg-actaaatagtgtatcacggaacaa 875714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 38346922 - 38346880
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  38346922 ctatttgacaacattttgtagtaaatagtgtatcacagaacaa 38346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 4787978 - 4787938
Alignment:
Q  409 tagccactatttgacaacattttgtattaaatagtgtatca 449  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  4787978 tagccactatttgacaacattttgtactaaatagtgtatca 4787938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 40991038 - 40990978
Alignment:
Q  394 gctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaa 454  Q
    |||||| ||||  |||| ||||||||||||||||||||||| ||||||| || ||||||||    
T  40991038 gctatagcaccactatacccactatttgacaacattttgtactaaatagcgtgtcacagaa 40990978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 449
Target Start/End: Original strand, 41846726 - 41846818
Alignment:
Q  357 aaaacagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatca 449  Q
    ||||||||||| || ||| |||||| |||||| |||||||||| | ||| ||||| ||| |||| |||| |||||||| ||||| | ||||||    
T  41846726 aaaacagcggtttgctcaaattctgctatgcagcagtgctatagcgccgctatagtcaccatttcacaatattttgtactaaatggcgtatca 41846818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Original strand, 41399571 - 41399606
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcac 450  Q
    |||||||||||||||||||| |||||||||||||||    
T  41399571 ctatttgacaacattttgtactaaatagtgtatcac 41399606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 34156762 - 34156681
Alignment:
Q  369 tgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcac 450  Q
    |||||| |||||| |||||| |||||||||| |||  ||||||   |||||| ||||||||||| | ||||||| |||||||    
T  34156762 tgttcaaattctgctatgcaacagtgctatagcacaaatatagttgctatttaacaacattttgcactaaatagcgtatcac 34156681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 40213865 - 40213922
Alignment:
Q  390 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    |||||||||| |||| ||||||| || |||||||||||||||||| || |||| ||||    
T  40213865 cagtgctatagcaccaatatagctaccatttgacaacattttgtactacatagcgtat 40213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 483
Target Start/End: Complemental strand, 41894477 - 41894409
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgctagg 483  Q
    ||||||||||||| |||||| ||||||| ||||  ||||||||  || | ||| |||||||||||||||    
T  41894477 ctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaattctgctagg 41894409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 30900046 - 30900155
Alignment:
Q  348 agattgcagaaaacagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||||||||| || ||| || ||| |||| | |||| | |||| ||||| |||||  ||||||||||||| |||| |||||||| ||||||||||||    
T  30900046 agattgcagaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtat 30900145  T
Q  448 cacagaacaa 457  Q
    | | ||||||    
T  30900146 cgctgaacaa 30900155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 23218621 - 23218663
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  23218621 ctatttgacaacattttgtattaaatagcgtatcatagaacaa 23218663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 457
Target Start/End: Complemental strand, 30478022 - 30477955
Alignment:
Q  390 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||   ||||||||||||||||||||||||| ||||||  ||||| || ||| ||||||||    
T  30478022 cagtgctatattgccgatatagccactatttgacaacactttgtacaaaataatgcatcgcagaacaa 30477955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 490
Target Start/End: Original strand, 38622872 - 38622955
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgctaggttatagc 490  Q
    ||||||| |||||||||||||||||||  ||||||||||||||  ||||||   ||| ||  ||||||||||||| | ||||||    
T  38622872 tatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctatagc 38622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 457
Target Start/End: Complemental strand, 2898960 - 2898910
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||||||| |||| |||||| ||||||||| ||||||| ||||||    
T  2898960 tatagccactatttcacaatattttgcattaaatagcgtatcacggaacaa 2898910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 1109348 - 1109392
Alignment:
Q  413 cactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||| |||||||||||||||| ||||||||||||| | ||||||    
T  1109348 cactacttgacaacattttgtactaaatagtgtatcgcggaacaa 1109392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 457
Target Start/End: Original strand, 2219504 - 2219568
Alignment:
Q  393 tgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||| ||||| |||| || ||||||||||| |||||||| |||||||  ||||| |||||||    
T  2219504 tgctatagcaccgttataaccgctatttgacaatattttgtactaaatagcatatcagagaacaa 2219568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 25314032 - 25314092
Alignment:
Q  416 tatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattc 476  Q
    ||||| |||||| ||||||  |||||||||||||||||||||  |||| ||| ||||||||    
T  25314032 tatttaacaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattc 25314092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 40869547 - 40869587
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||| |||||||||||||||||||| |||||| |||||    
T  40869547 tatagccgctatttgacaacattttgtactaaatactgtat 40869587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 31694720 - 31694765
Alignment:
Q  412 ccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  31694720 ccactatttgaaaacattttgtactaaatagtgtatcacagaacaa 31694765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 457
Target Start/End: Original strand, 9074112 - 9074179
Alignment:
Q  390 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||| | ||| ||||||| |||||||| ||||||||||| ||||||||||||| || |||||    
T  9074112 cagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaa 9074179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 21869923 - 21869881
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
T  21869923 ctatttgacaacattttgtactaaatagtgtatcacggaacaa 21869881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Complemental strand, 26373151 - 26373101
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||| |||||||||||||||| |||||| ||||||| ||||||||||||||    
T  26373151 tataaccactatttgacaacactttgtactaaatagcgtatcacagaacaa 26373101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 434
Target Start/End: Complemental strand, 9075291 - 9075213
Alignment:
Q  356 gaaaacagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgta 434  Q
    |||||||| ||| |||||| |||| | ||| || |||||||||| | ||| |||| || ||||||||||||||||||||    
T  9075291 gaaaacagtggtttgttcacattccgttatacaacagtgctatagcgccgctataacctctatttgacaacattttgta 9075213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 18270616 - 18270658
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||| |||| |||||||||||||||||||||| ||||||||    
T  18270616 ctatttcacaatattttgtattaaatagtgtatcgcagaacaa 18270658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 9163818 - 9163774
Alignment:
Q  413 cactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||||||||||||||||||| ||||||| |||| || ||||||    
T  9163818 cactatttgacaacattttgtactaaatagcgtataacggaacaa 9163774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 33735426 - 33735478
Alignment:
Q  405 gatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||| | |||||||||||||||||||| |||||||  |||||| ||||||    
T  33735426 gatatagtcgctatttgacaacattttgtactaaatagcatatcacggaacaa 33735478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Complemental strand, 34581647 - 34581597
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||| ||||||    
T  34581647 tatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaa 34581597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 2843583 - 2843624
Alignment:
Q  416 tatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  2843583 tatttgacaacattttgtactaaatagtgtatcgcagaacaa 2843624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 18968343 - 18968295
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatcacagaac 455  Q
    ||||||| |||||||||||||||||||| ||||||||||| | ||||||    
T  18968343 tatagccgctatttgacaacattttgtactaaatagtgtaactcagaac 18968295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 30617204 - 30617310
Alignment:
Q  349 gattgcagaaaacagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatc 448  Q
    |||||||||||| |||||| |||||| ||||   || ||| || ||||||| || || ||| |||||||||| |||| |||||||| | ||||| |||||    
T  30617204 gattgcagaaaatagcggtttgttcaaattccactacgcaacaatgctatagcatcgctattgccactatttcacaatattttgtact-aatagcgtatc 30617302  T
Q  449 acagaaca 456  Q
    ||||||||    
T  30617303 acagaaca 30617310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 20989560 - 20989522
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgt 445  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  20989560 tatagccgctatttgacaacattttgtactaaatagtgt 20989522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 32677045 - 32677007
Alignment:
Q  413 cactatttgacaacattttgtattaaatagtgtatcaca 451  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  32677045 cactatttgacaatattttgtagtaaatagtgtatcaca 32677007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 47789231 - 47789191
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  47789231 tatagccactatttgacaacagtttgtactaaatagagtat 47789191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 477
Target Start/End: Complemental strand, 15955953 - 15955891
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattct 477  Q
    |||||||||||||||||||  |||||||||||||||| |||||  |||| ||| |||||||||    
T  15955953 ctatttgacaacattttgtcctaaatagtgtatcacataacaagaacgatttgttcaaattct 15955891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 43391497 - 43391618
Alignment:
Q  377 ttctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattc 476  Q
    ||||| |||||| |||||||||| ||  | ||||||| | |||||||||||||||||| ||||||||| |||   ||||||   ||| ||| ||||||||    
T  43391497 ttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaacattttgtactaaatagtgcatcggggaacaatagcgatttgttcaaattc 43391596  T
Q  477 tgctaggttatagcactgtagc 498  Q
    ||| | | ||||||| ||||||    
T  43391597 tgccatgctatagcattgtagc 43391618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 6025946 - 6025998
Alignment:
Q  390 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatag 442  Q
    |||||||||| | | | |||||||||||||||||||||||||||| |||||||    
T  6025946 cagtgctatagcgctgctatagccactatttgacaacattttgtactaaatag 6025998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Complemental strand, 17472886 - 17472847
Alignment:
Q  409 tagccactatttgacaacattttgtattaaatagtgtatc 448  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  17472886 tagccactatttgactacattttgtattaaatagcgtatc 17472847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 3335437 - 3335396
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatc 448  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||    
T  3335437 tatagccactatttgaccacactttgtattaaatattgtatc 3335396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 1118976 - 1118936
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  1118976 tatagccactatttgacaacactttgtactaaatagagtat 1118936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 1272 - 1321
Alignment:
Q  408 atagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| ||||||    
T  1272 atagcctctatttgacaacactttgtactaaatagtgtatcacggaacaa 1321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 4329 - 4280
Alignment:
Q  408 atagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| ||||||    
T  4329 atagcctctatttgacaacactttgtactaaatagtgtatcacggaacaa 4280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 22807100 - 22807145
Alignment:
Q  409 tagccactatttgacaacattttgtattaaatagtgtatcacagaa 454  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||    
T  22807100 tagccattatttgacaacatttcgtactaaatagtgtatcacagaa 22807145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 13851005 - 13851045
Alignment:
Q  411 gccactatttgacaacattttgtattaaatagtgtatcaca 451  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  13851005 gccactatttgataacattttgtactaaatagtatatcaca 13851045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 8788967 - 8789008
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtatc 448  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  8788967 tatagcctctatttgacaacattttgtatttaatagtgtatc 8789008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 24830221 - 24830165
Alignment:
Q  391 agtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||||| | |||||||||||  |||||||||||||||| || ||||||||||||    
T  24830221 agtgctatagcgccgatatagcctttatttgacaacattttatactaaatagtgtat 24830165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 51295746 - 51295676
Alignment:
Q  411 gccactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgcta 481  Q
    ||||||| | |||||||||||||| ||||||| |||||||  |||||  |||| ||||||||| |||||||    
T  51295746 gccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgcta 51295676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 54842197 - 54842239
Alignment:
Q  415 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 457  Q
    ||||||||||||||||| || ||||||| ||||||||||||||    
T  54842197 ctatttgacaacattttatactaaatagcgtatcacagaacaa 54842239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 2990979 - 2991016
Alignment:
Q  411 gccactatttgacaacattttgtattaaatagtgtatc 448  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  2990979 gccactatttgacaacattttgtactaaatagcgtatc 2991016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 96735 - 96695
Alignment:
Q  407 tatagccactatttgacaacattttgtattaaatagtgtat 447  Q
    ||||||| |||||||||||||||||||| |||||| |||||    
T  96735 tatagccgctatttgacaacattttgtactaaatactgtat 96695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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