View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19782_low_71 (Length: 247)
Name: NF19782_low_71
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_71 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 43324995 - 43324763
Alignment:
| Q |
5 |
tgaggtctttgtggcggcaagggtttctaattgggtttttggagaggattttcaagcaagggaaaggattggttgtttcttgggcaccacaaaaagagat |
104 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43324995 |
tgaggtcttcttggcgtcaagggttaccaattgggtttttggagaggattttcaagcaagggaaaggattggttgtttcttgggccccacaaaaagagat |
43324896 |
T |
|
| Q |
105 |
tttgcaacacaattctgtaggttgttttatcactcattgtggttggaattctacattggaagctttacaattcaaaaagaaattgttgtgttaccctgtg |
204 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43324895 |
tttggaacacaattctgtaggttgttttatcactcattgtggttggaattctacattggaagctttacaattccaaaagaaattgttgtgttaccctgtg |
43324796 |
T |
|
| Q |
205 |
gctggagatcagtttgtgaattgtgcctatatt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43324795 |
gctggagatcagtttgtgaattgtgcctatatt |
43324763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 30817232 - 30817184
Alignment:
| Q |
122 |
taggttgttttatcactcattgtggttggaattctacattggaagcttt |
170 |
Q |
| |
|
|||| |||||| | || ||||||||||||||||| |||||||||||||| |
|
|
| T |
30817232 |
tagggtgttttgtaacacattgtggttggaattccacattggaagcttt |
30817184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 30858693 - 30858645
Alignment:
| Q |
122 |
taggttgttttatcactcattgtggttggaattctacattggaagcttt |
170 |
Q |
| |
|
|||| |||||| | || ||||||||||||||||| |||||||||||||| |
|
|
| T |
30858693 |
tagggtgttttgtaacacattgtggttggaattccacattggaagcttt |
30858645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University