View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_74 (Length: 245)

Name: NF19782_low_74
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_74
NF19782_low_74
[»] chr2 (14 HSPs)
chr2 (41-227)||(11192274-11192460)
chr2 (42-227)||(11170888-11171073)
chr2 (45-227)||(11148263-11148445)
chr2 (16-62)||(11185416-11185462)
chr2 (45-125)||(11145085-11145165)
chr2 (45-105)||(11117894-11117954)
chr2 (156-223)||(11135670-11135737)
chr2 (47-109)||(11109426-11109488)
chr2 (50-84)||(11198311-11198345)
chr2 (47-95)||(11095314-11095362)
chr2 (47-95)||(11103455-11103503)
chr2 (45-82)||(10794280-10794317)
chr2 (47-100)||(11176981-11177034)
chr2 (183-211)||(11109324-11109352)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 11192274 - 11192460
Alignment:
Q  41 tataatacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaacgtttgctaagacactttgg 140  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||    
T  11192274 tataatacatacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgtttgctaagatactttgg 11192373  T
Q  141 acaatggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcaca 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192374 acaatggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcaca 11192460  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 11171073 - 11170888
Alignment:
Q  42 ataatacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaacgtttgctaagacactttgga 141  Q
    ||||||| |||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||| | |||||| |||  ||  ||     | |    
T  11171073 ataatacttacttgaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtcttagaaacatttcttagtacttcacgaa 11170974  T
Q  142 caatggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcaca 227  Q
    ||||||||   ||||| ||||| |||||| ||||||||  |  |||||||||||||||||| |||||||| |||||||||||||||    
T  11170973 caatggaatgaacattaggacaagtgtccctatagaaggaattatcaagttgtgcatttgatgagaagggtaaccctccaagcaca 11170888  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 11148445 - 11148263
Alignment:
Q  45 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaacgtttgctaagacactttggacaa 144  Q
    |||||||||||||||||||| ||||||||||||||||| |  | |||  ||||||||||||||||| | | ||||||  ||  || |||     | ||||    
T  11148445 atacatacttgaacaaaacagtcatgaaagtgaagcctgacaagactaccaagcatacgaggatctttcttagaaacacttcttatgacttcacgaacaa 11148346  T
Q  145 tggaagtgacatttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaagcaca 227  Q
    ||||| | ||||||||||| |||| | | || |||   ||||||||||||||||||||||||||||| |||||||||||||||    
T  11148345 tggaactaacatttggacaagtgttcctgtaaaaggatggatcaagttgtgcatttgaagagaagggtaaccctccaagcaca 11148263  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11185416 - 11185462
Alignment:
Q  16 atcacatcgcaattatactaaatactataatacatacttgaacaaaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11185416 atcacatcgcaattatactaaatactataatacatacttgaacaaaa 11185462  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 11145165 - 11145085
Alignment:
Q  45 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatctgtttgagaaacgttt 125  Q
    |||||||||||||||||||| ||||| |||||||||||||  | ||| ||||||||||||| |||||| | ||||||||||    
T  11145165 atacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgttt 11145085  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 11117954 - 11117894
Alignment:
Q  45 atacatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||| ||||    
T  11117954 atacatacttgaacgaaacaatcatgaaagtgaagcctaatgatactcgcaggcattcgag 11117894  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 11135737 - 11135670
Alignment:
Q  156 tttggacatgtgtccttatagaagttaggatcaagttgtgcatttgaagagaagggaaaccctccaag 223  Q
    |||||||| |||||| ||||||||  ||||||||||||||||| ||| |||||||| |||||||||||    
T  11135737 tttggacaagtgtccctatagaaggaaggatcaagttgtgcatctgaggagaagggtaaccctccaag 11135670  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 11109488 - 11109426
Alignment:
Q  47 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcatacgaggatc 109  Q
    |||||||||||| |||||||||||||| |||||||| |||| ||||||| |||| || |||||    
T  11109488 acatacttgaacgaaacaatcatgaaaatgaagcctgatgatactggcaggcattcggggatc 11109426  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 11198345 - 11198311
Alignment:
Q  50 tacttgaacaaaacaatcatgaaagtgaagcctaa 84  Q
    |||||||||||||||||||||||||||||||||||    
T  11198345 tacttgaacaaaacaatcatgaaagtgaagcctaa 11198311  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 11095362 - 11095314
Alignment:
Q  47 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggca 95  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||    
T  11095362 acatacttgaacaaagcaatcatggaaatgaagcctaatgagactggca 11095314  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 11103503 - 11103455
Alignment:
Q  47 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggca 95  Q
    ||||||||||||||| ||||||||||| |||||||| |||| |||||||    
T  11103503 acatacttgaacaaagcaatcatgaaaatgaagcctgatgagactggca 11103455  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 10794280 - 10794317
Alignment:
Q  45 atacatacttgaacaaaacaatcatgaaagtgaagcct 82  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  10794280 atacttacttgaacgaaacaatcatgaaagtgaagcct 10794317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 11177034 - 11176981
Alignment:
Q  47 acatacttgaacaaaacaatcatgaaagtgaagcctaatgaaactggcaagcat 100  Q
    |||||||||||||||||| |||||||| || |||||||||| |||  |||||||    
T  11177034 acatacttgaacaaaacagtcatgaaaatgtagcctaatgagactaccaagcat 11176981  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 11109352 - 11109324
Alignment:
Q  183 ggatcaagttgtgcatttgaagagaaggg 211  Q
    |||||||||||||||||||||||||||||    
T  11109352 ggatcaagttgtgcatttgaagagaaggg 11109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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