View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19782_low_8 (Length: 551)
Name: NF19782_low_8
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 535
Target Start/End: Original strand, 38758052 - 38758580
Alignment:
| Q |
16 |
atgaaattatataggtactcccaaatcataaaataggattgagccaccagatatgataatcaaaattgaaaatgacatgttttacattcaaccataaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
38758052 |
atgaaattatataggtactcccaaatcataaaataggattgaaccaccacatatgataatcaaaattgaaaatgacatgttttacattcaaccatcaaaa |
38758151 |
T |
|
| Q |
116 |
agattgaattttaattttgtcaagaaggtgatgaagaacgtcctgattttgctggaaa-tccgagcatttctttcttgttagatgacccaaacagtcgaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38758152 |
agattgaattttaattttgtcaagaaggtgatgaagaacgtcctgattttgctggaaaatgcgagcatttctttcttgtcagatgacccaaacagtcgaa |
38758251 |
T |
|
| Q |
215 |
aactaaaccagatgaagaatcgtgcataacttttttgaagagtctcttagagccacaaaatgaattaaatggtccaaaatatgagacaaattgaccaaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38758252 |
aactaaaccagatgaagaatcgtgcataacttttttgaagagtctcctaaagccacaaaatgaattaaatggtccaaaatatgagacaaattgaccaaga |
38758351 |
T |
|
| Q |
315 |
tgaagtctaaccaattataaacaacattccaaatttgccagaaaaaatcacaatgaagaaaaaagttatttacgtcctctgtattaccac--------ac |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
38758352 |
tgaagcctaaccaattataaacaacattccaaatttgccaaaaaaaatcacaatgaagaaaaaagttatttacgtcctctgtattaccacaccctcctac |
38758451 |
T |
|
| Q |
407 |
ataaagccgatcaatagttgtgagaacactctgtcctattaaatagtcaattgtcagaataagattacggataagccgctacacaaagaggcaaacttgg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38758452 |
ataaagccgatcaatagttgtgagaacactccgtcctattaaatagccagttgtcataataagattacggataagccgccacacaaagaggcaaacttgg |
38758551 |
T |
|
| Q |
507 |
attcaatccaaccagtaacaatgagtgtg |
535 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
38758552 |
attcaatccaaccagtaacaatgattgtg |
38758580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 39778228 - 39778391
Alignment:
| Q |
69 |
tgataatcaaaattgaaaatgacatgttttacattcaaccataaaaaagattgaattttaattttgtcaagaaggtgatgaagaacgtcctgattttgct |
168 |
Q |
| |
|
|||||||||||||||||||| || |||| | |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
39778228 |
tgataatcaaaattgaaaatcccacgtttcgccttcagccatcaaagtgattgaattttaattttgtcaagaaggtgatgaagaacgtcctgttgttgct |
39778327 |
T |
|
| Q |
169 |
gg-aaatccgagcatttctttcttgttagatgacccaaacagtcgaaaactaaaccagatgaag |
231 |
Q |
| |
|
|| |||| || | |||| |||| || ||||||||| |||||||||| ||| ||||||| ||||| |
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|
| T |
39778328 |
ggaaaatacgtgaatttatttcctgctagatgacctaaacagtcgataaccaaaccagctgaag |
39778391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 19233324 - 19233291
Alignment:
| Q |
113 |
aaaagattgaattttaattttgtcaagaaggtga |
146 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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|
| T |
19233324 |
aaaagattgaattttaattttgtcaagtaggtga |
19233291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 45 - 395
Target Start/End: Original strand, 24758425 - 24758775
Alignment:
| Q |
45 |
aaaataggattgagccaccagatatgataatcaaaattgaaaatgacatgttttacattcaaccataaaaaagattgaattttaattttgtcaagaaggt |
144 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||| | |||| ||| ||||||||||||| ||||||||| |||||||||| |
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|
| T |
24758425 |
aaaataggaatgagctaccacatatgataatcaaaattaaaaatgacatgttttgccttcagccacaaaaaagattgaaatttaattttatcaagaaggt |
24758524 |
T |
|
| Q |
145 |
gatgaagaacgtcctgattttgct-ggaaatccgagcatttctttcttgttagatgacccaaacagtcgaaaactaaaccagatgaagaatcgtgcataa |
243 |
Q |
| |
|
||||||| | || |||||||| | | |||| | |||||| |||| ||| |||||||||||| | |||||||| |||||| || ||| | || ||||| |
|
|
| T |
24758525 |
gatgaagtatatcttgattttgttagaaaatacatgcatttatttcctgtcagatgacccaaaaaatcgaaaaccaaaccaaatcaagtaccgctcataa |
24758624 |
T |
|
| Q |
244 |
cttttttgaagagtctcttagagccacaaaatgaattaaatggtccaaaatatgagacaaattgaccaagatgaagtctaaccaattataaacaacattc |
343 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||| | | ||| ||| ||||||||||| || |||||||||||| |||||||||| ||| | || || |
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|
| T |
24758625 |
cttttttgaagagcctcccagagccacaatatgagtcagatgatccgaaatatgagacggataaaccaagatgaagcctaaccaattgtaatgagca-tc |
24758723 |
T |
|
| Q |
344 |
caaatttgccagaaaaaatcacaatgaagaaaaaagttatttacgtcctctg |
395 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| || || |||||||||| |
|
|
| T |
24758724 |
caaatttgtcgaaaaaaatcacaatgaagaaaaaggtgatcaacgtcctctg |
24758775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 4263543 - 4263664
Alignment:
| Q |
112 |
aaaaagattgaattttaattttgtcaagaaggtgatgaagaacgtcctgattttgctggaaa-tccgagcatttctttcttgttagatgacccaaacagt |
210 |
Q |
| |
|
|||||| ||| | ||||||||| ||||| |||||||||||||| | || |||| ||||||| | |||||||| || ||||||||||||||||||| ||| |
|
|
| T |
4263543 |
aaaaagtttgtaatttaattttatcaagtaggtgatgaagaacattctccttttcctggaaaattcgagcatt-ctctcttgttagatgacccaaatagt |
4263641 |
T |
|
| Q |
211 |
cgaaaactaaaccagatgaagaa |
233 |
Q |
| |
|
|||||| ||| || |||||||| |
|
|
| T |
4263642 |
tgaaaacaaaatcaaatgaagaa |
4263664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 33445215 - 33445324
Alignment:
| Q |
269 |
acaaaatgaattaaatggtccaaaatatgagacaaattgaccaagatgaagtctaaccaattataaacaacattccaaatttgccagaaaaaatcacaat |
368 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||| | |||||||||| |||| ||||| | ||||||||||| | |||||| || |||||||||||| |
|
|
| T |
33445215 |
acaaaatgaatcaaatgatctaaaaaatgagacggaatgaccaagataaagttgaaccagtcgtaaacaacatttcgaatttgacaagaaaaatcacaat |
33445314 |
T |
|
| Q |
369 |
gaagaaaaaa |
378 |
Q |
| |
|
|||||||||| |
|
|
| T |
33445315 |
gaagaaaaaa |
33445324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 17212467 - 17212575
Alignment:
| Q |
269 |
acaaaatgaattaaatggtccaaaatatgagacaaattgaccaagatgaagtctaaccaattataaacaacattccaaatttgccagaaaaaatcacaat |
368 |
Q |
| |
|
||||||||||||||| | |||||||||||| || ||||||||| ||||||| ||||||| ||||||||||||||||||||||| || |||||||| | | |
|
|
| T |
17212467 |
acaaaatgaattaaaggatccaaaatatgaaactaattgaccatgatgaagactaaccagttataaacaacattccaaatttgtcaataaaaatcatatt |
17212566 |
T |
|
| Q |
369 |
gaagaaaaa |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
17212567 |
gaagaaaaa |
17212575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 17212236 - 17212297
Alignment:
| Q |
88 |
tgacatgttttacattcaaccataaaaaagattgaattttaattttgtcaagaaggtgatga |
149 |
Q |
| |
|
|||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17212236 |
tgacatgtttcacatttaacaaccaaaaagattgaattttaattttgtcaagaaggtgatga |
17212297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 406
Target Start/End: Complemental strand, 15523138 - 15522844
Alignment:
| Q |
113 |
aaaagattgaattttaattttgtcaagaaggtgatgaagaacgtcctgattttgctggaaa-tccgagcatttctttcttgttagatgacccaaacagtc |
211 |
Q |
| |
|
|||||||||||||||||||||||| || | | ||||||| || |||| ||||||| ||| | | || |||||||||| | ||||| | |||||| || |
|
|
| T |
15523138 |
aaaagattgaattttaattttgtcgagtaagagatgaagcacatcctctttttgcttaaaaatacaagtatttctttctcgctagataatgcaaacaatc |
15523039 |
T |
|
| Q |
212 |
gaaaactaaaccagatgaagaatcgtgcataacttttttgaagagtctcttagagccacaaaatgaattaaatggtccaaaatatgagacaaattgacca |
311 |
Q |
| |
|
| ||| |||||| | ||||| | || ||||||||| ||| || ||| | || ||||||||||| ||||| | ||||| |||||||||| |||| |
|
|
| T |
15523038 |
aagaaccaaaccaatttaagaacagcgcgtaactttttagaatagcctcccaaggcaacaaaatgaatcaaatgatatgaaatacgagacaaattaacca |
15522939 |
T |
|
| Q |
312 |
agatgaagtctaaccaattataaacaacattccaaatttgccagaaaaaatcacaatgaagaaaaaagttatttacgtcctctgtattaccacac |
406 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||||||||| | |||||||||||||||| |||| | || |||||| |||| ||||||||| |
|
|
| T |
15522938 |
agataaagtcgaaccagttgtaaacaacattccaaatttgacgataaaaatcacaatgaaggaaaagatgatctacgtcttctgatttaccacac |
15522844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 34514609 - 34514683
Alignment:
| Q |
304 |
attgaccaagatgaagtctaaccaattataaacaacattccaaatttgccag-aaaaaatcacaatgaagaaaaa |
377 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| |||||| |||||||| ||| |||||||| || |||||||||| |
|
|
| T |
34514609 |
attgaccatgatgaagactaaccaattataaagaacatttcaaatttgacagtaaaaaatcgcagtgaagaaaaa |
34514683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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