View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19782_low_80 (Length: 235)
Name: NF19782_low_80
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_80 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 21094297 - 21094079
Alignment:
| Q |
3 |
agttaatgtgtttagttttactatgataaaaaatgattttgaatgaacttgaaaatgagatgacatgttaagagcaacttcaattaagaatcaatttatg |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21094297 |
agttaatgtgtttagttctactatgataaaaattgattttgaatgaacttgaaaataagttgacatgtttagagcaacttcaattaagaatcaatttatg |
21094198 |
T |
|
| Q |
103 |
gagacaaactcagttctataatcaaaaacttcaaattctatcttaaaattaagaatcagttttaatcaaaagctgtccaacatgtcgaagttaattctac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21094197 |
aagacaaactcagttctataatcaaaaacttcaaattctatcttaaaattaagaatcaattttaatcaaaagctgtcgaacatgtcgaagttaattctac |
21094098 |
T |
|
| Q |
203 |
aactatctaatcaattttt |
221 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21094097 |
aactatctaatcaattttt |
21094079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University