View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_85 (Length: 227)
Name: NF19782_low_85
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_85 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 1234460 - 1234294
Alignment:
| Q |
59 |
tattaaaaaatgactaaatgagttaaggactaattgtnnnnnnntgggttaaggactttgtagaaaactcaaggagtttgcttaatgattaagacttagg |
158 |
Q |
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| T |
1234460 |
tattaaaaaatgactaaatgagttaaggactaattgtaaaaaaatgggttaaggactttgtagaaaactcaaggagtttgcttaatggttaagacttatg |
1234361 |
T |
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| Q |
159 |
tttgggtctttgttttggtcaaaactttgaaccttttttgaaccatatcgagtgaaacaatgtatatga |
227 |
Q |
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| T |
1234360 |
tttgggtctttgttttggtcaaaactttgaaccttttttgaacc--atcgagtgaaacaatgtatatga |
1234294 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 41967505 - 41967404
Alignment:
| Q |
124 |
aactcaaggagtttgcttaatgattaagacttaggtttgggtctttgttttggtcaaaactttgaaccttttttgaaccatatcgagtgaaacaatgtat |
223 |
Q |
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| T |
41967505 |
aactcaaggagtttgcttaatggttaagacttatgcttgggtctttgttttggtcaaaactttgagccttttttgaacc--atcgagtcaaacaatgtat |
41967408 |
T |
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| Q |
224 |
atga |
227 |
Q |
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|||| |
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| T |
41967407 |
atga |
41967404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 95
Target Start/End: Complemental strand, 41967552 - 41967521
Alignment:
| Q |
64 |
aaaaatgactaaatgagttaaggactaattgt |
95 |
Q |
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| T |
41967552 |
aaaaatgactaaatgagttaaggactaattgt |
41967521 |
T |
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