View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_89 (Length: 222)

Name: NF19782_low_89
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_89
NF19782_low_89
[»] chr8 (14 HSPs)
chr8 (7-65)||(40740850-40740908)
chr8 (7-67)||(41472085-41472145)
chr8 (17-65)||(16939324-16939372)
chr8 (10-60)||(7120849-7120899)
chr8 (10-67)||(34892883-34892940)
chr8 (18-67)||(39513269-39513318)
chr8 (25-65)||(29033993-29034033)
chr8 (17-57)||(31745134-31745174)
chr8 (16-51)||(20861946-20861981)
chr8 (29-67)||(6013904-6013942)
chr8 (29-67)||(43520869-43520907)
chr8 (7-60)||(36345976-36346029)
chr8 (18-67)||(37651758-37651807)
chr8 (18-67)||(39831098-39831147)
[»] chr3 (13 HSPs)
chr3 (117-171)||(32593312-32593366)
chr3 (17-65)||(20485617-20485665)
chr3 (17-67)||(14043979-14044029)
chr3 (17-67)||(7941052-7941102)
chr3 (10-67)||(45076324-45076381)
chr3 (17-67)||(1294158-1294208)
chr3 (10-67)||(34645504-34645561)
chr3 (24-65)||(7839588-7839629)
chr3 (23-60)||(18746674-18746711)
chr3 (18-67)||(32592159-32592208)
chr3 (18-67)||(42760291-42760340)
chr3 (18-67)||(50330554-50330603)
chr3 (7-67)||(26494567-26494627)
[»] chr7 (15 HSPs)
chr7 (11-67)||(30845893-30845949)
chr7 (11-65)||(11886959-11887013)
chr7 (16-67)||(13644363-13644414)
chr7 (10-66)||(28115547-28115603)
chr7 (18-65)||(16681130-16681177)
chr7 (18-65)||(17655366-17655413)
chr7 (10-67)||(38555487-38555544)
chr7 (25-67)||(27450114-27450156)
chr7 (17-67)||(31324886-31324936)
chr7 (18-67)||(5541625-5541674)
chr7 (18-67)||(19804571-19804620)
chr7 (18-67)||(34139751-34139800)
chr7 (18-67)||(47521359-47521408)
chr7 (17-65)||(7974883-7974931)
chr7 (7-67)||(36781520-36781580)
[»] chr1 (8 HSPs)
chr1 (17-67)||(12627181-12627231)
chr1 (17-67)||(5329065-5329115)
chr1 (7-65)||(42290843-42290901)
chr1 (10-67)||(4208338-4208395)
chr1 (25-67)||(38119523-38119565)
chr1 (15-65)||(48455439-48455489)
chr1 (7-67)||(21140967-21141027)
chr1 (10-60)||(5330088-5330137)
[»] chr4 (6 HSPs)
chr4 (7-67)||(43176699-43176759)
chr4 (17-67)||(48806427-48806477)
chr4 (16-67)||(37856824-37856875)
chr4 (21-65)||(2448921-2448965)
chr4 (18-65)||(51036447-51036494)
chr4 (18-67)||(20208452-20208501)
[»] chr5 (7 HSPs)
chr5 (18-67)||(41622115-41622164)
chr5 (10-66)||(35564204-35564260)
chr5 (17-67)||(41623129-41623179)
chr5 (18-60)||(204455-204497)
chr5 (24-65)||(18512739-18512780)
chr5 (18-67)||(38408549-38408598)
chr5 (17-65)||(13838505-13838553)
[»] chr2 (4 HSPs)
chr2 (10-67)||(37294283-37294340)
chr2 (7-67)||(16544313-16544373)
chr2 (7-67)||(28139628-28139688)
chr2 (21-60)||(29406921-29406960)
[»] chr6 (4 HSPs)
chr6 (17-60)||(9391218-9391261)
chr6 (19-65)||(15888882-15888928)
chr6 (26-67)||(11157652-11157693)
chr6 (17-45)||(14834671-14834699)
[»] scaffold0188 (1 HSPs)
scaffold0188 (17-67)||(27997-28047)
[»] scaffold0176 (1 HSPs)
scaffold0176 (18-67)||(676-725)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 40740908 - 40740850
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  40740908 tgtcgaaggatatttgggtaaattactcgtgtttctcagccaaaccaaatgtgtgaaca 40740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 41472085 - 41472145
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  41472085 tgtcgaagggtatttgggtaaattactcgtgtttctcagccaaatcaaatgtgtgaacaac 41472145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 16939372 - 16939324
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||    
T  16939372 tatttgggtaaattactcgtgtttctcagcaaaaccaaatgtgtgaaca 16939324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 7120899 - 7120849
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    ||||| |||||| | ||||||||||||||||||||| ||||||||||||||    
T  7120899 cgaaggatatttagataaattactcgtgtttctcagccaaactaaatgtgt 7120849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 34892883 - 34892940
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| ||||||| ||||||||||| |||||||||| ||||  |||||||||||||||    
T  34892883 cgaaggatatttgagtaaattactcatgtttctcagccaaatcaaatgtgtgaacaac 34892940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39513269 - 39513318
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| ||||||||||||||||||||||| |||||||| ||||||    
T  39513269 atttgagtaatttactcgtgtttctcagtcaaaccaaatgtgtcaacaac 39513318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 29034033 - 29033993
Alignment:
Q  25 taaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  29034033 taaattactcgtgtttcttagtcaaaccaaatgtgtgaaca 29033993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 31745174 - 31745134
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatg 57  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  31745174 tatttgggtaaattactcgtgtttctcagccaaaccaaatg 31745134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 20861946 - 20861981
Alignment:
Q  16 atatttgggtaaattactcgtgtttctcagtcaaac 51  Q
    |||||||||||||||||||||||||||||| |||||    
T  20861946 atatttgggtaaattactcgtgtttctcagccaaac 20861981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 6013904 - 6013942
Alignment:
Q  29 ttactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  6013904 ttactcgtgtttctcagccaaactaaatgtgtcaacaac 6013942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 43520869 - 43520907
Alignment:
Q  29 ttactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  43520869 ttactcgtgtttctcactcaaaccaaatgtgtgaacaac 43520907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 36345976 - 36346029
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    |||||||||| ||||| |||| |||||||||||| |||| ||||| ||||||||    
T  36345976 tgtcgaagaacatttgagtaatttactcgtgtttatcagccaaaccaaatgtgt 36346029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37651807 - 37651758
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| ||||||||||||||||| ||||| |||||||| ||||||    
T  37651807 atttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaac 37651758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 39831147 - 39831098
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||| |||||||||||||||| |||||| ||||| |||||||| ||||||    
T  39831147 atttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaacaac 39831098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 32593312 - 32593366
Alignment:
Q  117 gttcatataagcgtgtttatattgcgagtggattaatttaagtgctatattgcaa 171  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  32593312 gttcatataagcgtgcttatattgcgagtggattaatttaagtgctatatcgcaa 32593366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 20485617 - 20485665
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20485617 tatttgggtaaattactcgtgtttctcagccaaactaaatgtgtgaaca 20485665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 14043979 - 14044029
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  14043979 tatttgggtaaattactcgtgtttctcagccaaactaaatgtgtaaacaac 14044029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 7941102 - 7941052
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  7941102 tatttaggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 7941052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 45076324 - 45076381
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| ||| |||||||||||    
T  45076324 cgaaggatatttgggtaaattactcgtatttctcagccaaaccaaaagtgtgaacaac 45076381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 1294158 - 1294208
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||| ||||||||||||||||||||||| | |||||| ||||||    
T  1294158 tatttgggtaatttactcgtgtttctcagtcaaacaacatgtgtcaacaac 1294208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 34645561 - 34645504
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||||| ||||||||||||||||||||||| |||  ||||||||| ||||||    
T  34645561 cgaaggatatttaggtaaattactcgtgtttctcagccaaggtaaatgtgtcaacaac 34645504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 7839588 - 7839629
Alignment:
Q  24 gtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    ||||||||||||||| |||||| ||||| |||||||||||||    
T  7839588 gtaaattactcgtgtatctcagccaaaccaaatgtgtgaaca 7839629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 18746674 - 18746711
Alignment:
Q  23 ggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  18746674 ggtaaattactagtgtttctcagttaaactaaatgtgt 18746711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32592208 - 32592159
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| ||||||||||||||||| ||||| |||||||| ||||||    
T  32592208 atttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaac 32592159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 42760291 - 42760340
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||| |||||||||||||||| |||||| ||||| |||||||| ||||||    
T  42760291 atttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaacaac 42760340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 50330603 - 50330554
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| |||||||||||| |||| ||||| |||||||||||||||    
T  50330603 atttgagtaatttactcgtgtttatcagccaaaccaaatgtgtgaacaac 50330554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 26494567 - 26494627
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||| ||| ||||| |||| ||||||||||||||||| ||||| |||||| | ||||||    
T  26494567 tgtcgatgaacatttgagtaatttactcgtgtttctcagccaaaccaaatgtatcaacaac 26494627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 30845949 - 30845893
Alignment:
Q  11 gaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||    
T  30845949 gaagaatatttgggtaaattattcgtgtttctcaatcaaaccaaatgtgtgaacaac 30845893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 11886959 - 11887013
Alignment:
Q  11 gaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  11886959 gaaggatatttgggtaaattactcgtgtttcttagccaaactaaatgtgtgaaca 11887013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 13644414 - 13644363
Alignment:
Q  16 atatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  13644414 atatttgggtaaattactcgtgtttctcagccaaatcaaatgtgtgaacaac 13644363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 28115547 - 28115603
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaa 66  Q
    ||||| ||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  28115547 cgaaggatatttgggtaaattactcgtgtttttcagccaaaccaaatgtgtcaacaa 28115603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16681130 - 16681177
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||    
T  16681130 atttaggtaaattactcgtgtgtctcagtctaactaaatgtgtgaaca 16681177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 17655366 - 17655413
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||    
T  17655366 atttaggtaaattactcgtgtgtctcagtctaactaaatgtgtgaaca 17655413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 38555487 - 38555544
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| ||||||| |||||||||||||||||||| | ||||| |||||| ||||||||    
T  38555487 cgaaggatatttgagtaaattactcgtgtttctcggccaaaccaaatgtctgaacaac 38555544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 27450156 - 27450114
Alignment:
Q  25 taaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||||||||| |||||||||||| |||||||| ||||||    
T  27450156 taaattactcgtgtgtctcagtcaaaccaaatgtgtcaacaac 27450114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 31324886 - 31324936
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||| | ||||||||||||||||||||||| | |||||| ||||||    
T  31324886 tatttgggttatttactcgtgtttctcagtcaaaccacatgtgtcaacaac 31324936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 5541625 - 5541674
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||| |||||||||||||||| |||||| ||||| |||||||| ||||||    
T  5541625 atttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaacaac 5541674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 19804571 - 19804620
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||| |||||||||||||||| |||||| ||||| |||||||| ||||||    
T  19804571 atttaggtaaattactcgtgtgtctcagccaaacaaaatgtgtcaacaac 19804620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 34139751 - 34139800
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| ||||||||||||||||| |||||| ||||||| ||||||    
T  34139751 atttgagtaatttactcgtgtttctcagccaaactcaatgtgtcaacaac 34139800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 47521408 - 47521359
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||| |||||||||||||||||||||||  |||| |||||||| ||||||    
T  47521408 atttaggtaaattactcgtgtttctcagctaaaccaaatgtgtcaacaac 47521359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 7974931 - 7974883
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    ||||||||||| ||||||||||||||||| ||||| | |||||| ||||    
T  7974931 tatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaaca 7974883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 36781520 - 36781580
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||| | ||||||||||||||||||||| |||||||| ||||  ||| |||| ||||||    
T  36781520 tgtcgagggatatttgggtaaattactcgtatttctcagccaaatcaaacgtgtcaacaac 36781580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 12627231 - 12627181
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  12627231 tatttgggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 12627181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 5329115 - 5329065
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  5329115 tatttgggtaaattattcgtgtttctcagccaaaccaaatgtgtgaacaac 5329065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 42290843 - 42290901
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||| ||| |||||||||    
T  42290843 tgtcgaaggatatttgagtaaattactcgtatttctcagtcaaaccaaaagtgtgaaca 42290901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 4208395 - 4208338
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| ||||||| ||||||||||||||||||||| |||||| |||||||| ||||||    
T  4208395 cgaaggatatttgagtaaattactcgtgtttctcaatcaaaccaaatgtgtcaacaac 4208338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 38119565 - 38119523
Alignment:
Q  25 taaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  38119565 taaattactcgtgtgtctcagtcaaactaaatgtgtcaacaac 38119523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 48455489 - 48455439
Alignment:
Q  15 aatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    ||||||||||||||||||||||||||||||  ||||  |||||||||||||    
T  48455489 aatatttgggtaaattactcgtgtttctcaaccaaatcaaatgtgtgaaca 48455439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 21141027 - 21140967
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||| | |||| |||||||||||||||| |||||| ||||| |||||||| ||||||    
T  21141027 tgtcgaaggacatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaacaac 21140967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 5330088 - 5330137
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    ||||||||||||| |||| ||||||||||||||||| ||||| ||||||||    
T  5330088 cgaagaatatttgagtaatttactcgtgtttctcagccaaac-aaatgtgt 5330137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 43176699 - 43176759
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||  ||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  43176699 tgtcgaagggtatttaggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 43176759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 48806477 - 48806427
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  48806477 tatttggataaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 48806427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 37856824 - 37856875
Alignment:
Q  16 atatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||| |||||||||||||||||||| || ||||| |||||||||||||||    
T  37856824 atatttaggtaaattactcgtgtttcttagccaaaccaaatgtgtgaacaac 37856875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 2448965 - 2448921
Alignment:
Q  21 tgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||    
T  2448965 tgggtaaattactcgtgtttatcagccaaaccaaatgtgtgaaca 2448921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 51036494 - 51036447
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| |||||    
T  51036494 atttgggtaaattactagtgtttctcaggcaaaccaaatgtgggaaca 51036447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 20208501 - 20208452
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| ||||||||||||||||| ||||| |||||||| ||||||    
T  20208501 atttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaac 20208452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41622164 - 41622115
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  41622164 atttgagtaatttactcgtgtttctcagtcaaactaaatgtgtcaacaac 41622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 35564260 - 35564204
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaa 66  Q
    ||||||||||||| |||||||||||||||||||||  ||||| |||||||| |||||    
T  35564260 cgaagaatatttgagtaaattactcgtgtttctcaaccaaaccaaatgtgtcaacaa 35564204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 41623129 - 41623179
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||||||||||| ||||||||||||  |||| |||||||||||||||    
T  41623129 tatttgggtaaattacccgtgtttctcagctaaaccaaatgtgtgaacaac 41623179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 204497 - 204455
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||    
T  204497 atttgagtaaattactggtgtttctcagccaaactaaatgtgt 204455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 18512739 - 18512780
Alignment:
Q  24 gtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    |||| ||||||||||||||||| |||||||||||||| ||||    
T  18512739 gtaatttactcgtgtttctcagccaaactaaatgtgtcaaca 18512780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 38408549 - 38408598
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||| |||||||||||||||| |||||| ||||| |||||||| ||||||    
T  38408549 atttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaacaac 38408598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 13838505 - 13838553
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    ||||||||||| ||||||||||||||||| ||||| | |||||| ||||    
T  13838505 tatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaaca 13838553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 37294340 - 37294283
Alignment:
Q  10 cgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||| |||| ||||||    
T  37294340 cgaaggatatttgggtaaattactcgtgtttatcagccaaactaaacgtgtcaacaac 37294283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 16544373 - 16544313
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    |||||||| |||||| | ||||||||||||||||||| | ||||| |||||||||||||||    
T  16544373 tgtcgaaggatatttagataaattactcgtgtttctcggccaaaccaaatgtgtgaacaac 16544313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 28139628 - 28139688
Alignment:
Q  7 tgtcgaagaatatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||  ||||||  ||||||||||||||||||||| ||||  |||||||||||||||    
T  28139628 tgtcgaagggtatttgaataaattactcgtgtttctcagccaaatcaaatgtgtgaacaac 28139688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 29406960 - 29406921
Alignment:
Q  21 tgggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  29406960 tgggtaaattactcgtgtttctcagccaaaccaaatgtgt 29406921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 9391218 - 9391261
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgt 60  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  9391218 tatttgggtaaattactagtgtttctcagccaaactaaatgtgt 9391261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 15888882 - 15888928
Alignment:
Q  19 tttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaaca 65  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  15888882 tttgggtaaattactcgtgtttctcagccaaaccaaatgtgtaaaca 15888928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 11157693 - 11157652
Alignment:
Q  26 aaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||| |||||||| ||||| |||||||||||||||    
T  11157693 aaattactcgtatttctcagccaaaccaaatgtgtgaacaac 11157652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 14834699 - 14834671
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcag 45  Q
    |||||||||||||||||||||||||||||    
T  14834699 tatttgggtaaattactcgtgtttctcag 14834671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 27997 - 28047
Alignment:
Q  17 tatttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| ||||||    
T  27997 tatttgggtaatttactcgtgtttctcagccaaactacatgtgtcaacaac 28047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 676 - 725
Alignment:
Q  18 atttgggtaaattactcgtgtttctcagtcaaactaaatgtgtgaacaac 67  Q
    ||||| |||| ||||||||||||||||| |||||| ||||||| ||||||    
T  676 atttgagtaatttactcgtgtttctcagccaaactcaatgtgtcaacaac 725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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