View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_low_9 (Length: 540)

Name: NF19782_low_9
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_low_9
NF19782_low_9
[»] chr2 (5 HSPs)
chr2 (17-526)||(37957564-37958073)
chr2 (244-526)||(37952056-37952338)
chr2 (316-496)||(37897147-37897327)
chr2 (313-496)||(44905646-44905830)
chr2 (313-496)||(28166801-28166985)
[»] chr3 (4 HSPs)
chr3 (314-496)||(11528562-11528744)
chr3 (273-496)||(39712954-39713177)
chr3 (403-496)||(3149622-3149715)
chr3 (165-226)||(24549621-24549682)
[»] chr4 (2 HSPs)
chr4 (273-496)||(34539264-34539487)
chr4 (313-496)||(11148747-11148931)
[»] chr7 (1 HSPs)
chr7 (273-496)||(38757782-38758006)
[»] chr1 (1 HSPs)
chr1 (273-369)||(13223286-13223382)


Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 37957564 - 37958073
Alignment:
Q  17 aaatacatggtcgggatgatttctctataataactttcgctataaatagcatttttgaaaataatgttatcagtatttaacattaaaaatctgattagta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37957564 aaatacatggtcgggatgatttctctataataactttcgctataaatagcatttttgaaaataatgttatcagtatttaacattataaatctgattagta 37957663  T
Q  117 ttaataagtataattaagcaatacagcgttgtcccgtgtgttgcaaggtactcctactagttttatacatgcattatcttgaaatatactatttattgct 216  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37957664 ttaataaatataattaagcaatacagcgttgtcccgtgcgttgcaaggtactccgactagttttatacatgcattatcttgaaatatactatttattgct 37957763  T
Q  217 tctccccaatggcagagcataagcttgttgagatttcagaaatggcagagcaacagcttattgagcaagctcttgtttctccatcaacaccaagaacaac 316  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37957764 tctccccaatggcggagcataagcttgttgagatttcagaaatggcagagcaaaagcttattgagcaagctcttgtttctccatcaacaccaagaacaac 37957863  T
Q  317 aacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacccat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37957864 aacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttccacattcaacaacccat 37957963  T
Q  417 ttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaacccc 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37957964 ttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctagctggaaatcttcaatgtcctccacaacccc 37958063  T
Q  517 acaaaccttt 526  Q
    ||||||||||    
T  37958064 acaaaccttt 37958073  T

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Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 244 - 526
Target Start/End: Original strand, 37952056 - 37952338
Alignment:
Q  244 ttgagatttcagaaatggcagagcaacagcttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattcct 343  Q
    ||||||||||| |||||||| | ||  |||||||||||||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37952056 ttgagatttcacaaatggcaaatcataagcttattgagcaaactgttgtttttccatcaacaccaagaacaacaacaacttttcttcctctcacattcct 37952155  T
Q  344 tgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctc 443  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  37952156 cgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcctcattcaacaacccatttttctaaaacaacacttccatctctc 37952255  T
Q  444 aaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaaccccacaaaccttt 526  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||    
T  37952256 aaacactctctttctcttactcttcaacatttcttccctcttgctggaaatcttcactgtcctctaccaccccacaaaccttt 37952338  T

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Target: chr2; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 316 - 496
Target Start/End: Complemental strand, 37897327 - 37897147
Alignment:
Q  316 caacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaaccca 415  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||  ||||  |||||||||||||||||  ||||||||||| ||    
T  37897327 caacaatttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaactca 37897228  T
Q  416 tttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct 496  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37897227 tttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatct 37897147  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 496
Target Start/End: Complemental strand, 44905830 - 44905646
Alignment:
Q  313 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 412  Q
    |||||||||||| |||||||||||||||  |||||| || |||||| | ||||||||| ||| || || |||||||| | |  |||    ||| ||| |     
T  44905830 caacaacaacttatcttcctctcacattttttgactagcattttgctgatccagtctacgttaaatgcatattcttcgacccttttgcttatttaaccaa 44905731  T
Q  413 ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 496  Q
    ||||||||| ||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||| || ||||||||    
T  44905730 ccatttttgcaaaacaacacttccatcgctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct 44905646  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 313 - 496
Target Start/End: Complemental strand, 28166985 - 28166801
Alignment:
Q  313 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 412  Q
    |||||||||||| ||||||| |||||||  ||||||||| |||||| |||||||||||  || || |  |||| ||| | |  |||    ||||||| |     
T  28166985 caacaacaacttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaatgaatatttttcgacccttttgcttattcaaccaa 28166886  T
Q  413 ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 496  Q
    ||||||||| |||||||||||||| ||||||||| |  | ||||||||||||||||||||||||||||||||| |||||||||||    
T  28166885 ccatttttgcaaaacaacacttccttctctcaaaaaaatttctttctcttactcttcaacatttcttccctcttgctggaaatct 28166801  T

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Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 314 - 496
Target Start/End: Complemental strand, 11528744 - 11528562
Alignment:
Q  314 aacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacc 413  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||||| ||||||||||||  |||    ||||||| | |    
T  11528744 aacaacaacttctcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttctatccttttgcttattcaaccaac 11528645  T
Q  414 catttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct 496  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  11528644 catttttgcaaaacaacactaccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatct 11528562  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 273 - 496
Target Start/End: Complemental strand, 39713177 - 39712954
Alignment:
Q  273 cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatg 372  Q
    |||||||||||| ||||||| | |||  |||||  || | ||||||| |||| ||||||||||||||| |||||||||| |||||| |||||| |||| |    
T  39713177 cttattgagcaaactcttgtgtttcctgcaacaagaacagcaacaactacttatcttcctctcacatttcttgacttgcattttgctggtccaatctacg 39713078  T
Q  373 ttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaaca 472  Q
     | ||||||||||||||||||  ||||  ||||| || | ||||||||| |||||||||||||||||||||||||| ||||||||   | ||||||||||    
T  39713077 ctaaacgcttattcttctatccttttcctcattctaccaaccatttttgcaaaacaacacttccatctctcaaacagtctctttcatgtgctcttcaaca 39712978  T
Q  473 tttcttccctctggctggaaatct 496  Q
    ||| |||||||| |||||||||||    
T  39712977 ttttttccctcttgctggaaatct 39712954  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 403 - 496
Target Start/End: Original strand, 3149622 - 3149715
Alignment:
Q  403 attcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct 496  Q
    ||||||| | ||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  3149622 attcaaccagccatttttgcaaaacaacacttccatctctcgaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatct 3149715  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 24549621 - 24549682
Alignment:
Q  165 tactcctactagttttatacatgcattatcttgaaatatactatttattgcttctccccaat 226  Q
    |||||| |||| ||||||| ||  |||||||||||||||| ||||||||| |||||||||||    
T  24549621 tactccgactaattttataaatttattatcttgaaatatattatttattgtttctccccaat 24549682  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 273 - 496
Target Start/End: Complemental strand, 34539487 - 34539264
Alignment:
Q  273 cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatg 372  Q
    |||||||||||| ||||||||| || | ||||| ||| |||||||||||||| ||||||||||| |||  ||||||||| |||||| |||||| ||||      
T  34539487 cttattgagcaaactcttgtttttcgagcaacaacaaaaacaacaacaacttatcttcctctcatattttttgacttgcattttgctggtccaatctaca 34539388  T
Q  373 ttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaaca 472  Q
    || || || |||||||| | |  |||    ||||||| | ||||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  34539387 ttaaatgcatattcttcgacccttttgcttattcaaccaaccattttcgcaaaacaacacttccatctctcaaaaaatctctttctcttactcttcaaca 34539288  T
Q  473 tttcttccctctggctggaaatct 496  Q
    |||||||||||| || ||||||||    
T  34539287 tttcttccctcttgccggaaatct 34539264  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 496
Target Start/End: Original strand, 11148747 - 11148931
Alignment:
Q  313 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 412  Q
    |||||||||||| |||||||||||||||  ||||||||| |||||  ||||||||||| ||| || || |||||||| | |  |||    ||||||| |     
T  11148747 caacaacaacttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttacttattcaaccaa 11148846  T
Q  413 ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 496  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||| | |||||||||||    
T  11148847 ccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactgttcaacatttcttcccttttgctggaaatct 11148931  T

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Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 273 - 496
Target Start/End: Complemental strand, 38758006 - 38757782
Alignment:
Q  273 cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatg 372  Q
    |||||||||||||||||||||| |  | ||||| ||| |||||||||||||| ||||||||| |||||  ||| ||||| |||||  ||||||||||| |    
T  38758006 cttattgagcaagctcttgttttttgagcaacaacaaaaacaacaacaacttatcttcctctaacattttttgccttgcattttgttggtccagtctacg 38757907  T
Q  373 ttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaac 471  Q
    || || || |||||||| | |  |||    ||||||| | ||||||||| |||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  38757906 ttaaatgcatattcttcgacccttttgcttattcaaccaaccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactcttcaac 38757807  T
Q  472 atttcttccctctggctggaaatct 496  Q
    ||||||||||||| || ||||||||    
T  38757806 atttcttccctcttgccggaaatct 38757782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 13223286 - 13223382
Alignment:
Q  273 cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtct 369  Q
    |||||||||||| ||||||||| || | ||||| ||  |||||||||||||| ||||||||||| |||  || |||||| |||||| ||||||||||    
T  13223286 cttattgagcaaactcttgtttttcgagcaacaacacaaacaacaacaacttatcttcctctcaaatttttttacttgcattttgctggtccagtct 13223382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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