View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_92 (Length: 208)
Name: NF19782_low_92
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_92 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 45961523 - 45961326
Alignment:
| Q |
1 |
aatcggtacaaatcccctttgcttatataattttagtacgtataatatgcaactttcattaacaccatcttcattaatcaatgcagtaacccattaccat |
100 |
Q |
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| T |
45961523 |
aatcggtacaaatcccctttgcttatataattttagtacgtataatatgcaactttcattaacaccatcttcattaatcaatgcggtaacccattaccat |
45961424 |
T |
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| Q |
101 |
aattcaaactagtttttatattttcatattagggatttgcaatttatacaccatagattcagcacataatcatcattccagaaagcattgaacctatg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961423 |
aattcaaactagtttttatattttcatattagggatttgcaatttatacaccatagattcagcacataatcatcattccagaaagcattgaacctatg |
45961326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 292335 - 292519
Alignment:
| Q |
1 |
aatcggtacaaatcccctttgcttatataattttagtacgtataatatgcaactttcattaacaccatcttcattaatcaatgcagtaacccattaccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
292335 |
aatcggtacaaatcccctttgcttatataattttagtacgtataatatgcaactttcattaacaccgtcttt-------------gtaatccattaccac |
292421 |
T |
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| Q |
101 |
aattcaaactagtttttatattttcatattagggatttgcaatttatacaccatagattcagcacataatcatcattccagaaagcattgaacctatg |
198 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||| | ||||||||||||| |
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| T |
292422 |
aattcaaactagtttttatattttcatattagtgatttgcaatttataaaccacagattcagcacataatcaacattccagagatcattgaacctatg |
292519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 142305 - 142346
Alignment:
| Q |
157 |
attcagcacataatcatcattccagaaagcattgaacctatg |
198 |
Q |
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| T |
142305 |
attcagcacataatcaacattccagaaatcattgaacctatg |
142346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 33132540 - 33132502
Alignment:
| Q |
108 |
actagtttttatattttcatattagggatttgcaattta |
146 |
Q |
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| T |
33132540 |
actagtttttatattttcatattagtgatttgtaattta |
33132502 |
T |
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