View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_low_93 (Length: 206)
Name: NF19782_low_93
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 1043141 - 1042949
Alignment:
| Q |
1 |
ttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaattat |
100 |
Q |
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| T |
1043141 |
ttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaattat |
1043042 |
T |
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| Q |
101 |
gtgaaattatttagcaagagtnnnnnnntattgaaatgaaatagaatacaaaatgaaatggtatatactatgtagtatgtacctatgagctagat |
195 |
Q |
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| T |
1043041 |
gtgaaattatttagcaagagcaaaaaaaaattgaaatgaaatagaatacaaaatgaaatgg--tatactatgtagtatgtacctatgagctagat |
1042949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1049235 - 1049116
Alignment:
| Q |
1 |
ttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaattat |
100 |
Q |
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| T |
1049235 |
ttagaggttctctgagaataatactcgacagcaatggtttgaggaacattgttgtatgatctcattcttgttagcggtgccaaaacaactctgaaattat |
1049136 |
T |
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| Q |
101 |
gtgaaattatttagcaagag |
120 |
Q |
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| T |
1049135 |
gtgaaattatttagcaagag |
1049116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 1032697 - 1032638
Alignment:
| Q |
37 |
ggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaa |
96 |
Q |
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| T |
1032697 |
ggttgaggaacgttgccatatgatcttattctagtgagtggtgccaaaacaactctgaaa |
1032638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 1052020 - 1051961
Alignment:
| Q |
37 |
ggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaa |
96 |
Q |
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| T |
1052020 |
ggttgaggaacgttgccatatgatcttattctagtgagtggtgccaaaacaactctgaaa |
1051961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 1057794 - 1057762
Alignment:
| Q |
65 |
ttcttgttagtggtgccaaaacaactctgaaat |
97 |
Q |
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| T |
1057794 |
ttcttgtgagtggtgccaaaacaactctgaaat |
1057762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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