View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19783_low_2 (Length: 346)
Name: NF19783_low_2
Description: NF19783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19783_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 1225548 - 1225225
Alignment:
| Q |
15 |
accaaggacattattcaagtacagcattgatgtctttaatgggggcaattcaagcaactgtttttgccctttgtgttgagaaggattggagccaatggag |
114 |
Q |
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| T |
1225548 |
accaaggacattattcaagtacagcattgatgtctttaatgggggcaattcaagcaactctttttgccctttgtgttgagaaggatttgagccaatggag |
1225449 |
T |
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| Q |
115 |
gttgggtttgagtatcaggcttctaacttcagcatattccgtatgttaaatgttaattaattttttcataattattggttagcataatttggtatgttaa |
214 |
Q |
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| T |
1225448 |
gttgggtttgagtatcaggcttctaacttcagcatattccgtatgttaaatgttaattaattttttcataattattgattagcataatttggtatgttaa |
1225349 |
T |
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| Q |
215 |
tttataacatggtgaatttaatttggtgtttttgcagggaattgttgcctctggaataatggttatcgtcattgcatggtgtgtagggataagaggtcca |
314 |
Q |
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| T |
1225348 |
gttataacatggtgaattcaatttggtgtttttgcagggaattgttgcctctggaataatggttatcgtcattgcatggtgtgtagggataagaggtcca |
1225249 |
T |
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| Q |
315 |
ctatacacctctgccttcaatcct |
338 |
Q |
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|||||| ||||||||||||||||| |
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| T |
1225248 |
ctatacgcctctgccttcaatcct |
1225225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 9836939 - 9836795
Alignment:
| Q |
15 |
accaaggacattattcaagtacagcattgatgtctttaatgggggcaattcaagcaactgtttttgccctttgtgttgagaaggattggagccaatggag |
114 |
Q |
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| T |
9836939 |
accaaggacattattcaagtacatcattgatgtccttaatgggggcaattcaatccaccggttttgccctttgtgctgagaaggattggagccaatggag |
9836840 |
T |
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| Q |
115 |
gttgggtttgagtatcaggcttctaacttcagcatattccgtatg |
159 |
Q |
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| T |
9836839 |
attaggttggaatattaggttactaactgcattatattcggtatg |
9836795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 1214304 - 1214192
Alignment:
| Q |
23 |
cattattcaagtacagcattgatgtctttaatgggggcaattcaagcaactgtttttgccctttgtgttgagaaggattggagccaatggaggttgggtt |
122 |
Q |
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||||| ||||||||||| || |||||| |||||| ||||| ||||| |||| ||||| ||||||||||| | |||||||||||||||| |||||||| |
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| T |
1214304 |
cattactcaagtacagctttaatgtctacaatgggagcaatacaagccactgcttttggtctttgtgttgaaagagattggagccaatggaagttgggtt |
1214205 |
T |
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| Q |
123 |
tgagtatcaggct |
135 |
Q |
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| T |
1214204 |
ggaatatcaggct |
1214192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 9836716 - 9836646
Alignment:
| Q |
249 |
cagggaattgttgcctctggaataatggttatcgtcattgcatggtgtgtagggataagaggtccactata |
319 |
Q |
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| T |
9836716 |
cagggaattgtggcctcgggaataatggttattgctattgcatggtgtgtagagaggagaggtccattata |
9836646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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