View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19784_low_1 (Length: 678)

Name: NF19784_low_1
Description: NF19784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19784_low_1
NF19784_low_1
[»] chr3 (12 HSPs)
chr3 (17-663)||(6056591-6057240)
chr3 (426-645)||(3519303-3519522)
chr3 (471-626)||(43752096-43752251)
chr3 (469-593)||(10793639-10793763)
chr3 (492-636)||(3334402-3334546)
chr3 (529-619)||(5323838-5323928)
chr3 (469-543)||(41355928-41356002)
chr3 (490-614)||(53635346-53635469)
chr3 (526-589)||(444663-444726)
chr3 (485-564)||(43491981-43492060)
chr3 (480-542)||(51466923-51466984)
chr3 (492-564)||(51683929-51684000)
[»] chr8 (8 HSPs)
chr8 (410-663)||(7503888-7504142)
chr8 (403-545)||(13446427-13446573)
chr8 (492-645)||(41643135-41643288)
chr8 (532-619)||(20684127-20684214)
chr8 (487-565)||(11539072-11539150)
chr8 (507-663)||(4141715-4141870)
chr8 (488-587)||(41894092-41894192)
chr8 (469-650)||(14921019-14921200)
[»] chr4 (8 HSPs)
chr4 (472-645)||(32007859-32008033)
chr4 (471-645)||(43159437-43159611)
chr4 (504-642)||(3516794-3516931)
chr4 (531-650)||(2932959-2933077)
chr4 (504-546)||(14008528-14008570)
chr4 (504-565)||(11166946-11167007)
chr4 (504-565)||(29236640-29236701)
chr4 (609-663)||(29236551-29236605)
[»] chr2 (12 HSPs)
chr2 (469-628)||(11116514-11116672)
chr2 (471-663)||(11673390-11673581)
chr2 (469-565)||(30393179-30393275)
chr2 (536-645)||(11116423-11116533)
chr2 (504-652)||(19546538-19546685)
chr2 (536-636)||(12697414-12697513)
chr2 (578-650)||(982958-983030)
chr2 (492-564)||(6298944-6299015)
chr2 (490-548)||(9385654-9385712)
chr2 (471-593)||(17793328-17793450)
chr2 (504-565)||(32973614-32973675)
chr2 (596-636)||(37885394-37885434)
[»] chr7 (11 HSPs)
chr7 (471-619)||(27035173-27035321)
chr7 (506-589)||(21820017-21820100)
chr7 (480-593)||(31446954-31447067)
chr7 (494-565)||(2916193-2916264)
chr7 (490-615)||(31078425-31078551)
chr7 (529-626)||(18442023-18442120)
chr7 (501-546)||(20878367-20878412)
chr7 (525-593)||(48841470-48841538)
chr7 (496-565)||(42597319-42597388)
chr7 (472-539)||(28761633-28761700)
chr7 (578-636)||(27314692-27314750)
[»] chr5 (8 HSPs)
chr5 (425-624)||(15521134-15521334)
chr5 (469-624)||(15515795-15515950)
chr5 (469-636)||(14570241-14570408)
chr5 (535-641)||(36855236-36855342)
chr5 (526-642)||(5069100-5069216)
chr5 (469-641)||(969547-969715)
chr5 (472-543)||(14791026-14791097)
chr5 (469-542)||(3744992-3745066)
[»] chr6 (20 HSPs)
chr6 (474-619)||(10385308-10385453)
chr6 (469-640)||(5764080-5764244)
chr6 (469-640)||(5767615-5767779)
chr6 (469-640)||(5771150-5771314)
chr6 (469-640)||(5774685-5774849)
chr6 (469-640)||(5778220-5778384)
chr6 (469-640)||(5781755-5781919)
chr6 (469-640)||(5785290-5785454)
chr6 (469-640)||(5788825-5788989)
chr6 (469-640)||(5792360-5792524)
chr6 (469-640)||(5795895-5796059)
chr6 (469-640)||(5799430-5799594)
chr6 (469-640)||(5802965-5803129)
chr6 (469-640)||(5806500-5806664)
chr6 (469-640)||(5810035-5810199)
chr6 (469-640)||(5813570-5813734)
chr6 (469-640)||(5817105-5817269)
chr6 (504-650)||(6120031-6120177)
chr6 (469-593)||(10121064-10121181)
chr6 (552-663)||(9860126-9860237)
[»] chr1 (17 HSPs)
chr1 (487-656)||(14614880-14615049)
chr1 (469-662)||(11021194-11021378)
chr1 (492-636)||(26515680-26515818)
chr1 (507-636)||(27222768-27222896)
chr1 (501-586)||(50399883-50399968)
chr1 (492-588)||(9302108-9302204)
chr1 (479-619)||(13017734-13017874)
chr1 (410-593)||(8287054-8287237)
chr1 (535-641)||(8904724-8904829)
chr1 (492-569)||(35843972-35844050)
chr1 (526-650)||(3823765-3823886)
chr1 (504-574)||(41151311-41151382)
chr1 (578-644)||(27232310-27232376)
chr1 (469-619)||(45059352-45059491)
chr1 (469-543)||(30518752-30518826)
chr1 (486-548)||(44725218-44725280)
chr1 (525-565)||(17985695-17985735)


Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 663
Target Start/End: Complemental strand, 6057240 - 6056591
Alignment:
Q  17 cataagggacattgatgttgatcataaaaggatttcatgaactactattgtcaaccggtaattgttatgctcttgcagtcttgattacttcattatcttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6057240 cataagggacattgatgttgatcataaaaggatttcatgaactactattgtcaactggtaattgttatgctcttgcagtcttgattacttcattatcttg 6057141  T
Q  117 caaaataaaaactattatttgagtgtagtttatttagcctagtttgaaagtaaagagattcatacttttagttaatgatttgttcataattcctttttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057140 caaaataaaaactattatttgagtgtagtttatttagcctagtttgaaagtaaagagattcatacttttagttaatgatttgttcataattcctttttgt 6057041  T
Q  217 tttgtcttcaacaaaaattgtaagtacatttaacttggttttgtattcaacaaacctaagagagtacttagtctgttcattgttgattataaacataaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057040 tttgtcttcaacaaaaattgtaagtacatttaacttggttttgtattcaacaaacctaagagagtacttagtctgttcattgttgattataaacataaat 6056941  T
Q  317 atggtaatatgaatagaaatacatgataattaattaatcacgtgtccaaacattataattaatt-aattttgtttttaaccaaggttgtttccaacaatt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||    
T  6056940 atggtaatatgaatagaaatacatgataattaattaatcacgtgtccaaacattataattaattaaaaaaaaaatttaaccaaggttgtttccaacaatt 6056841  T
Q  416 tggagg-ccggttacatacttgacaatgttcatttaaaaagaattg-nnnnnnnntccaacactatttattgtgataaacaattaaattgtagttaaata 513  Q
    |||||| |||| |||  |||||||||| ||||||| ||| ||||||           ||||||||||||| |||||| ||||||||||||||||||||||    
T  6056840 tggaggcccggctacggacttgacaattttcattttaaatgaattgaaaaaaaaaatcaacactatttatagtgatagacaattaaattgtagttaaata 6056741  T
Q  514 tataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttt 613  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||    
T  6056740 tataagcaattgctcaaacatgacttttacctacaaataaatagacatttacttatggacaattcataattaacaataaaattgttgtcttccaaacttt 6056641  T
Q  614 tacctatggaaaaatgacatttaatgacggatgttgtatgtagatacaag 663  Q
    |||||| | |||||||||||||| |||||||||| || | ||||||||||    
T  6056640 tacctacgaaaaaatgacatttagtgacggatgtcgtctatagatacaag 6056591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 426 - 645
Target Start/End: Complemental strand, 3519522 - 3519303
Alignment:
Q  426 ttacatacttgacaatgttcatttaaaaagaattgnnnnnnnntccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattg 525  Q
    ||||| |||||| ||| ||||||||||||||||||          ||||||||||||| |||||| |||||||| |||||||| ||||||||| ||||      
T  3519522 ttacagacttgataattttcatttaaaaagaattgaaaaaaaaatcaacactatttatagtgatagacaattaagttgtagttcaatatataaacaatgc 3519423  T
Q  526 ttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaa 625  Q
    ||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||| ||| |||| ||||||||||||||||  ||||    
T  3519422 ttctaatatgacttttacctacatataaatagacatttacttatggacaattcataattgatagcaaaattgctgtcatccaaacttttacctaccgaaa 3519323  T
Q  626 aatgacatttaatgacggat 645  Q
    ||||||||||| ||||||||    
T  3519322 aatgacatttagtgacggat 3519303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 471 - 626
Target Start/End: Complemental strand, 43752251 - 43752096
Alignment:
Q  471 caacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatg 570  Q
    ||||| ||||||| |||||| | |||||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||  |||||||||     
T  43752251 caacattatttatagtgatagataattaaattgtaattaaatatatgaacaatggttcaaacatgacttttacctacaaataaatagatttttacttata 43752152  T
Q  571 gacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaa 626  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  43752151 gacaattcataattgatagtaaaattgttgtcttccaaacttttacctacggaaaa 43752096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 469 - 593
Target Start/End: Original strand, 10793639 - 10793763
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||||||||||||||  ||| |||||||||| || ||||||||||||| ||||||  ||||||||||||||||||||| | |||||||||||||||| ||    
T  10793639 tccaacactatttatgatgacaaacaattaagttttagttaaatatatgagcaatgattcaaacatgacttttacctatagataaatagacatttaccta 10793738  T
Q  569 tggacagttcataattgacagtaaa 593  Q
    || | ||| ||||||||| ||||||    
T  10793739 tgaatagtgcataattgagagtaaa 10793763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 492 - 636
Target Start/End: Complemental strand, 3334546 - 3334402
Alignment:
Q  492 acaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagta 591  Q
    |||||||||||||| |||||||||| | |||| ||||| |||| ||||||||| ||||| ||||||||||||   |||  | | |  |||||||||| ||    
T  3334546 acaattaaattgtaattaaatatatgaacaatggttcatacatcacttttaccgacaaacaaatagacatttttctataaataatgtataattgacaata 3334447  T
Q  592 aagttgttgtcttccaaacttttacctatggaaaaatgacattta 636  Q
    || ||| ||||||| |  ||||||||||  ||||||||| |||||    
T  3334446 aaattggtgtcttctagtcttttacctacagaaaaatgatattta 3334402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 619
Target Start/End: Original strand, 5323838 - 5323928
Alignment:
Q  529 aaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttaccta 619  Q
    ||||||||||||||||||||   | |||||||||||| ||  |||| | ||||||| |||||||| ||||| |||| || |||||||||||    
T  5323838 aaacatgacttttacctacatgcatatagacatttacctactgacaatgcataattaacagtaaaattgttatctttcagacttttaccta 5323928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 543
Target Start/End: Complemental strand, 41356002 - 41355928
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttac 543  Q
    ||||||||||||| | | |||| |||||| | |||||||||||||||| ||||||  ||||||||| ||||||||    
T  41356002 tccaacactatttctggcgatagacaatttagttgtagttaaatatatgagcaatgattcaaacataacttttac 41355928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 614
Target Start/End: Complemental strand, 53635469 - 53635346
Alignment:
Q  490 aaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacag 589  Q
    |||||||| | ||||||||||||| || || ||| |||||||||||| ||||| || |||| ||||||| |||||| |||  ||| | ||||||||  ||    
T  53635469 aaacaattgagttgtagttaaataaattagtaatggttcaaacatgattttta-ctgcaaacaaatagatatttacctataaacaatgcataattggtag 53635371  T
Q  590 taaagttgttgtcttccaaactttt 614  Q
     ||| ||||||||||  ||||||||    
T  53635370 caaaattgttgtcttataaactttt 53635346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 589
Target Start/End: Complemental strand, 444726 - 444663
Alignment:
Q  526 ttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacag 589  Q
    ||||||||||||||||||| ||| | |||||| ||||||| |||||||| |  |||||||||||    
T  444726 ttcaaacatgacttttaccgacagacaaataggcatttacctatggacaatgtataattgacag 444663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 564
Target Start/End: Complemental strand, 43492060 - 43491981
Alignment:
Q  485 gtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacattta 564  Q
    |||||||  |||||| |||||||||||||||| || | |  || ||| |||||||||| ||||| |||||||||||||||    
T  43492060 gtgataagtaattaagttgtagttaaatatatgagtattaatttaaatatgacttttatctacagataaatagacattta 43491981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 542
Target Start/End: Complemental strand, 51466984 - 51466923
Alignment:
Q  480 ttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgactttta 542  Q
    |||| |||||| |||| ||||||||||| ||||||||||||||| ||| ||||| ||||||||    
T  51466984 ttatagtgatagacaactaaattgtagt-aaatatataagcaatggtttaaacacgactttta 51466923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 492 - 564
Target Start/End: Complemental strand, 51684000 - 51683929
Alignment:
Q  492 acaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacattta 564  Q
    |||||||| |||||||||||| ||| | ||||  || ||| |||||||||||||||| |||||||| ||||||    
T  51684000 acaattaagttgtagttaaatgtatgaacaatgatt-aaatatgacttttacctacagataaataggcattta 51683929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 5e-58; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 410 - 663
Target Start/End: Complemental strand, 7504142 - 7503888
Alignment:
Q  410 acaatttggaggcc-ggttacatacttgacaatgttcatttaaaaagaattgnnnnnnnntccaacactatttattgtgataaacaattaaattgtagtt 508  Q
    |||||| ||||||| ||||||| |||||||||| |||||||||||| |||||        ||||||||||||||| |||| | |||||||| ||||||||    
T  7504142 acaattcggaggcccggttacagacttgacaattttcatttaaaaataattgaaaaaaaatccaacactatttatggtgacagacaattaagttgtagtt 7504043  T
Q  509 aaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaa 608  Q
    |||||||| |||||| |||||||||||| ||||||||||| ||||||| ||||||||||| ||| | | |||||||||| ||||| ||| |||||||||     
T  7504042 aaatatatgagcaatggttcaaacatgatttttacctacagataaataaacatttacttaaggataatgcataattgacggtaaaattgatgtcttccat 7503943  T
Q  609 acttttacctatggaaaaatgacatttaatgacggatgttgtatgtagatacaag 663  Q
    |||||||||||   ||||||||||||||||||| ||| |||| ||||||||||||    
T  7503942 acttttacctacaaaaaaatgacatttaatgacagattttgtctgtagatacaag 7503888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 403 - 545
Target Start/End: Complemental strand, 13446573 - 13446427
Alignment:
Q  403 gtttccaacaatttggaggccggttacatacttgacaatgttcatttaaaaagaattgnnnnnnnn----tccaacactatttattgtgataaacaatta 498  Q
    |||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||||||            ||||||||||||||  |||||| |||||||    
T  13446573 gtttccgacaatttggaggccggttacagacttgacaattttcgtttaaaaagaattgaaagaaaaaaaatccaacactatttacagtgatagacaatta 13446474  T
Q  499 aattgtagttaaatatataagcaattgttcaaacatgacttttacct 545  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13446473 aattgtagttaaatatataagcaatggttcaaacatgatttttacct 13446427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 492 - 645
Target Start/End: Complemental strand, 41643288 - 41643135
Alignment:
Q  492 acaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagta 591  Q
    |||| ||| |||||||||||||||| |||||| ||| |||||||||||||||||||| | ||| |||||||||| ||||| || | ||||||||| || |    
T  41643288 acaactaagttgtagttaaatatatgagcaatagtttaaacatgacttttacctacatacaaagagacatttacatatgggcaatgcataattgatagca 41643189  T
Q  592 aagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggat 645  Q
    || | ||||||||  ||||||||||||| | ||||||  |||||| ||| ||||    
T  41643188 aaatagttgtctttaaaacttttacctacgaaaaaattgcatttagtgatggat 41643135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 619
Target Start/End: Complemental strand, 20684214 - 20684127
Alignment:
Q  532 catgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttaccta 619  Q
    ||||| ||||| ||||| |||||||||||||||| |||| ||| | |||||||| ||||||| ||||||||||||  |||||||||||    
T  20684214 catgatttttatctacagataaatagacatttacctatgaacaatgcataattggcagtaaaattgttgtcttccggacttttaccta 20684127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 565
Target Start/End: Original strand, 11539072 - 11539150
Alignment:
Q  487 gataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||||| |||||| || ||||||||||||| |||| | ||||||||||||||||||  |||||| |||||||| |||||    
T  11539072 gataaataattaagttatagttaaatatatgagcattggttcaaacatgacttttatatacaaacaaatagacttttac 11539150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 663
Target Start/End: Original strand, 4141715 - 4141870
Alignment:
Q  507 ttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttcc 606  Q
    ||||||||| ||||||||||| |||||||||||||| | | | | |||| ||||||||| |||||||| |  ||| |||| | |||| | ||||  |||     
T  4141715 ttaaatataaaagcaattgtttaaacatgacttttatccatagacaaattgacatttacctatggacaatgtatagttgaaattaaa-tagttgaattct 4141813  T
Q  607 aaacttttacctatggaaaaatgacatttaatgacggatgttgtatgtagatacaag 663  Q
     ||||||||| ||  |||||||||||||| ||||||||| ||||  |||| ||||||    
T  4141814 gaacttttacttacagaaaaatgacattttatgacggattttgtccgtagttacaag 4141870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 587
Target Start/End: Complemental strand, 41894192 - 41894092
Alignment:
Q  488 ataaacaattaaattgtagttaaatatataagcaattgttcaaacatga-cttttacctacaaataaatagacatttacttatggacagttcataattga 586  Q
    |||||||| || ||| ||||||||||||  |||||| ||| |||||| | |||||||||| | | ||||||||||||||||||||||| |  ||||||||    
T  41894192 ataaacaactacattttagttaaatataagagcaatggtttaaacataaacttttacctatagacaaatagacatttacttatggacaatgtataattga 41894093  T
Q  587 c 587  Q
    |    
T  41894092 c 41894092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 650
Target Start/End: Complemental strand, 14921200 - 14921019
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||||||| |||||   ||||||| ||||||  || |||| ||||||| ||||  | ||||||||| ||||||||||| | | || |||||| |||| |     
T  14921200 tccaacaccatttacaatgataaataattaagctgcagttgaatatatgagcatatcttcaaacattacttttacctatagacaattagacacttacatg 14921101  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggatgttgt 650  Q
    |||| | |  ||||||||  | ||| |||||||||||||||||||||  || || ||||||||| ||| |||| ||| ||||    
T  14921100 tggaaaatgaataattgatggcaaaattgttgtcttccaaacttttatttacgggaaaatgacaattattgactgattttgt 14921019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 472 - 645
Target Start/End: Original strand, 32007859 - 32008033
Alignment:
Q  472 aacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatgg 571  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||  |||||||||||    
T  32007859 aacactgtttatagtgatagacaattaaattgtagttaaatatataagaaatagttcaaacatgacttttacctacggataaatagatctttacttatgg 32007958  T
Q  572 acagttcataattgacagtaaagttgttgtcttccaaacttttaccta-tggaaaaatgacatttaatgacggat 645  Q
    ||| |||||||||||||| ||| ||| ||| |||||||||||||||||  |||||||||||||||| ||| ||||    
T  32007959 acaattcataattgacagcaaaattgatgttttccaaacttttacctaggggaaaaatgacatttagtgatggat 32008033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 471 - 645
Target Start/End: Complemental strand, 43159611 - 43159437
Alignment:
Q  471 caacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatg 570  Q
    ||||||||||||| ||||||  ||||||| |||| |||||||||||||| ||| ||||||||||||||||||| |||  ||||||| ||||||||||||     
T  43159611 caacactatttatagtgataggcaattaagttgtggttaaatatataagtaatagttcaaacatgacttttacttacggataaataaacatttacttata 43159512  T
Q  571 gacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggat 645  Q
    |||| |||||||||||||  ||||||||  |||| |||||||| ||||| | ||||||||||| |||||||||||    
T  43159511 gacaattcataattgacaacaaagttgtcatcttacaaactttgacctacgaaaaaatgacatctaatgacggat 43159437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 642
Target Start/End: Original strand, 3516794 - 3516931
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtct 603  Q
    ||||||||||||  |||||| |||||||||| | ||||||| || ||||||||||||||||| || ||| | |  |||||||||| |||| | ||||  |    
T  3516794 tagttaaatatacgagcaatggttcaaacataatttttacc-accaataaatagacatttacctacggagaatgtataattgacaataaaatagttgaat 3516892  T
Q  604 tccaaacttttacctatggaaaaatgacatttaatgacg 642  Q
    || | ||||||||||| | |||||||||||||| |||||    
T  3516893 tctagacttttacctacgaaaaaatgacatttagtgacg 3516931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 650
Target Start/End: Complemental strand, 2933077 - 2932959
Alignment:
Q  531 acatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatga 630  Q
    |||||||||||||||| | ||||||||||||||| ||||| | | | ||||||| |||  ||| || |||| | ||||||| |||||||| || ||||||    
T  2933077 acatgacttttacctatagataaatagacatttagttatgtataatgcataatttacaacaaa-ttattgtatcccaaactattacctatagataaatga 2932979  T
Q  631 catttaatgacggatgttgt 650  Q
    ||||||| ||| ||| ||||    
T  2932978 catttaacgactgattttgt 2932959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 546
Target Start/End: Complemental strand, 14008570 - 14008528
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttaccta 546  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  14008570 tagttaaatatatgagcaatagttcaaacatgacttttaccta 14008528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 565
Target Start/End: Original strand, 11166946 - 11167007
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    ||||||||||||| |||||| |||||||||||| ||||||| ||  |||||| |||||||||    
T  11166946 tagttaaatatatcagcaatggttcaaacatgaattttacccacggataaatggacatttac 11167007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 565
Target Start/End: Complemental strand, 29236701 - 29236640
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||| |||||||  |||||| |||||||||||||||||||| ||| | ||||||||||||||    
T  29236701 tagtaaaatatacgagcaatggttcaaacatgacttttacccacataaaaatagacatttac 29236640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 663
Target Start/End: Complemental strand, 29236605 - 29236551
Alignment:
Q  609 acttttacctatggaaaaatgacatttaatgacggatgttgtatgtagatacaag 663  Q
    ||||||||||| |||||||||||||||| |||||||| ||||  |||| ||||||    
T  29236605 acttttacctacggaaaaatgacatttagtgacggattttgtccgtaggtacaag 29236551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 469 - 628
Target Start/End: Complemental strand, 11116672 - 11116514
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||||||||||| || |||||||||||| ||||| |  ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||    
T  11116672 tccaacactattgatggtgataaacaatcaaattattattaaatatataaggaatagttcaaacatgacttttacctacagataaatagacatttactta 11116573  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaat 628  Q
    ||| || || | ||||||||| ||| ||||||||||||||||||||||||| ||| ||||    
T  11116572 tgg-caatttaaaattgacaggaaaattgttgtcttccaaacttttacctacggataaat 11116514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 471 - 663
Target Start/End: Original strand, 11673390 - 11673581
Alignment:
Q  471 caacactatttattgtgataaacaattaaattgtagttaaatatataagcaattg-ttcaaacatgacttttacctacaaataaatagacatttacttat 569  Q
    |||||||||||||  |||||  ||||||| |||||||||||||||| | |||||| ||||||||||||||||||||| | || | |||||||||||||||    
T  11673390 caacactatttataatgatagccaattaagttgtagttaaatatatga-caattggttcaaacatgacttttacctatagattagtagacatttacttat 11673488  T
Q  570 ggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggatgttgtatgtagatacaag 663  Q
    ||| | | |||||||||||| ||| ||| |||||| | ||||||||||||| ||||||||||||||| |||| ||| |||| ||| | ||||||    
T  11673489 ggataatgcataattgacagcaaaattgatgtctttc-aacttttacctatagaaaaatgacatttagtgacagattttgtctgtggttacaag 11673581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 469 - 565
Target Start/End: Complemental strand, 30393275 - 30393179
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||||||||| |||| |||||||| |||||| |||| ||||||||||| |||| | |||||||||||||||||| ||||||| ||||||||||||||    
T  30393275 tccaacactacttatagtgataaataattaatttgtggttaaatatattagcattggttcaaacatgacttttatctacaaacaaatagacatttac 30393179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 536 - 645
Target Start/End: Complemental strand, 11116533 - 11116423
Alignment:
Q  536 acttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatg-gaaaaatgacatt 634  Q
    ||||||||||||  |||||||||| |||||||||| ||| ||||||||| |||| ||| ||||||||||||||||||||| ||| |  ||||||||||||    
T  11116533 acttttacctacggataaatagacctttacttatgtacaattcataattcacagcaaaattgttgtcttccaaacttttagctacgaaaaaaatgacatt 11116434  T
Q  635 taatgacggat 645  Q
    || ||||||||    
T  11116433 tagtgacggat 11116423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 652
Target Start/End: Original strand, 19546538 - 19546685
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtct 603  Q
    ||||||||||||  |||||| ||| |||||||||||||||| ||| | ||||| |||||||| |||||||| |  ||||||||||||||| | ||||  |    
T  19546538 tagttaaatatacgagcaatggtttaaacatgacttttaccaacagacaaatatacatttacctatggacaatgtataattgacagtaaa-tagttgaat 19546636  T
Q  604 tccaaacttttacctatggaaaaatgacatttaatgacggatgttgtat 652  Q
    ||   ||||||| ||||| ||| ||| |||||| |||||||| ||||||    
T  19546637 tctggacttttatctatgaaaacatggcatttagtgacggattttgtat 19546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 636
Target Start/End: Complemental strand, 12697513 - 12697414
Alignment:
Q  536 acttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacattt 635  Q
    ||||||||||| | | ||||||| ||| || ||||||||   |||||||||||||||| |||||||||| |||||||||||||| || ||||  ||||||    
T  12697513 acttttacctatagacaaatagatatt-acctatggacatcacataattgacagtaaaattgttgtctttcaaacttttacctacggtaaaacaacattt 12697415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 650
Target Start/End: Complemental strand, 983030 - 982958
Alignment:
Q  578 cataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggatgttgt 650  Q
    |||||||||| | ||| || ||||||| || | |||||||||| ||||||||||||||| |||||||| ||||    
T  983030 cataattgactgcaaaattattgtctttcataattttacctatagaaaaatgacatttagtgacggattttgt 982958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 564
Target Start/End: Original strand, 6298944 - 6299015
Alignment:
Q  492 acaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacattta 564  Q
    |||| |||||| ||||||||||||| || ||| ||| ||| |||||||||||||||| |||||| ||||||||    
T  6298944 acaactaaattatagttaaatatatgagtaatggtttaaatatgacttttacctacagataaat-gacattta 6299015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 548
Target Start/End: Complemental strand, 9385712 - 9385654
Alignment:
Q  490 aaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctaca 548  Q
    |||||| |||||| | |||||||||||||| ||||||| | | ||||||||||||||||    
T  9385712 aaacaactaaattatggttaaatatataagtaattgtttatatatgacttttacctaca 9385654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 593
Target Start/End: Complemental strand, 17793450 - 17793328
Alignment:
Q  471 caacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatg 570  Q
    |||||||| |||  |||| ||||| ||| ||| ||||||||||||  |||||| ||||||||||||||| | ||  |||| ||| | |||||||| ||||    
T  17793450 caacactacttagagtgacaaacatttacattctagttaaatatacgagcaatagttcaaacatgacttatgccgccaaacaaacaaacatttacatatg 17793351  T
Q  571 gacagttcataattgacagtaaa 593  Q
    ||   |  |||||||||||||||    
T  17793350 gattatgtataattgacagtaaa 17793328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 565
Target Start/End: Complemental strand, 32973675 - 32973614
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||||||||||||||||||| |||||||||  ||||||||| | |   ||||||||||||||    
T  32973675 tagttaaatatataagcaatggttcaaacaaaacttttacccataggcaaatagacatttac 32973614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 596 - 636
Target Start/End: Complemental strand, 37885434 - 37885394
Alignment:
Q  596 tgttgtcttccaaacttttacctatggaaaaatgacattta 636  Q
    |||||||||||||||||||| |||  |||||||||||||||    
T  37885434 tgttgtcttccaaacttttatctactgaaaaatgacattta 37885394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 471 - 619
Target Start/End: Complemental strand, 27035321 - 27035173
Alignment:
Q  471 caacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatg 570  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||   ||||||  || ||||||||||    
T  27035321 caacactatttatagtgatagacaattaagttgtagttaaatatataagcaatggttcaaacatgacttttacctatggataaattaacctttacttatg 27035222  T
Q  571 gacagttcataattgacagtaaagttgttgtcttccaaacttttaccta 619  Q
    |||| |||||||||||||  |||  ||||||||||||||| ||||||||    
T  27035221 gacaattcataattgacaacaaaaatgttgtcttccaaacatttaccta 27035173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 589
Target Start/End: Complemental strand, 21820100 - 21820017
Alignment:
Q  506 gttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacag 589  Q
    ||||||| || ||| ||| ||||||||||||||||||||||   ||||||||||||||||||||| ||| | ||||||||||||    
T  21820100 gttaaatgtacaagaaatagttcaaacatgacttttacctattgataaatagacatttacttatgtacaatgcataattgacag 21820017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 593
Target Start/End: Original strand, 31446954 - 31447067
Alignment:
Q  480 ttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttca 579  Q
    |||| |||| |||||| ||| |||||||||||||||| |  |||  |||||| ||||||||||| |||| | ||||||||||||| | ||||||| | ||    
T  31446954 ttatagtgacaaacaactaagttgtagttaaatatatgaataatgattcaaatatgacttttacttacacacaaatagacatttattcatggacaatgca 31447053  T
Q  580 taattgacagtaaa 593  Q
    ||||||||| ||||    
T  31447054 taattgacaataaa 31447067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 565
Target Start/End: Original strand, 2916193 - 2916264
Alignment:
Q  494 aattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||||| |||||||||||||||| || | | |||||||||||||||||| ||||| | ||||||||||||||    
T  2916193 aattaagttgtagttaaatatatgagaattggttcaaacatgacttttatctacagacaaatagacatttac 2916264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 615
Target Start/End: Original strand, 31078425 - 31078551
Alignment:
Q  490 aaacaattaaattgtagttaaatata-taagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgaca 588  Q
    |||||| ||| ||||||||||||||| | | |||| ||  | ||| || ||||||||||||| |||||||||||| | |||| ||| | |||||||||||    
T  31078425 aaacaactaagttgtagttaaatataatgaacaatagtaaacacacgatttttacctacaaacaaatagacattttcctatgaacaatgcataattgaca 31078524  T
Q  589 gtaaagttgttgtcttccaaactttta 615  Q
      ||| ||||||||||||| |||||||    
T  31078525 acaaaattgttgtcttccagactttta 31078551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 626
Target Start/End: Complemental strand, 18442120 - 18442023
Alignment:
Q  529 aaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaa 626  Q
    ||||||| |||||||||||| |||||||||||||||  |||  ||| | ||||||| |||  ||| |||||||||| ||||||| |||||||| ||||    
T  18442120 aaacatggcttttacctacatataaatagacatttatctataaacaatgcataatttacaacaaaattgttgtctttcaaacttgtacctatgaaaaa 18442023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 546
Target Start/End: Original strand, 20878367 - 20878412
Alignment:
Q  501 ttgtagttaaatatataagcaattgttcaaacatgacttttaccta 546  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  20878367 ttgtagttaaatatatgagcaatggttcaaacatgacttttaccta 20878412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 593
Target Start/End: Complemental strand, 48841538 - 48841470
Alignment:
Q  525 gttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaa 593  Q
    ||||||| |||||| ||||||||||| ||||||||||||| ||||| ||| | ||||||||||| ||||    
T  48841538 gttcaaatatgactcttacctacaaacaaatagacatttatttatgaacaatgcataattgacactaaa 48841470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 565
Target Start/End: Complemental strand, 42597388 - 42597319
Alignment:
Q  496 ttaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||| ||||| |||||||||| |||| | |||||||||||||||||| |||||   ||||||||||||||    
T  42597388 ttaagttgtaattaaatatattagcattggttcaaacatgacttttatctacagtcaaatagacatttac 42597319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 539
Target Start/End: Original strand, 28761633 - 28761700
Alignment:
Q  472 aacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgactt 539  Q
    ||||| |||||| |||| |||||| |||||| ||||||||||||||| ||||  |||||||| |||||    
T  28761633 aacaccatttatagtgacaaacaactaaattatagttaaatatataaacaatgcttcaaacacgactt 28761700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 636
Target Start/End: Original strand, 27314692 - 27314750
Alignment:
Q  578 cataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacattta 636  Q
    ||||||| | || ||| |||||||||| || |||||||||||| |||||||||||||||    
T  27314692 cataattaatagcaaaattgttgtctttcatacttttacctatagaaaaatgacattta 27314750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 425 - 624
Target Start/End: Complemental strand, 15521334 - 15521134
Alignment:
Q  425 gttacatacttgacaatgttcatttaaaaagaattgnnnnnnnn-tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaat 523  Q
    |||||| |||||||||| ||||||||||||||||||         ||||||||| ||||| || ||| |||||||||||||||||||||||||||||||     
T  15521334 gttacagacttgacaattttcatttaaaaagaattgtaaaaaaaatccaacactgtttatagtaatagacaattaaattgtagttaaatatataagcaag 15521235  T
Q  524 tgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatgga 623  Q
     |||||||||||||||||| |||   |||||||||  |||||||||||||| |||||||||||||  | | |||||||||||||||| |||||||| |||    
T  15521234 ggttcaaacatgacttttagctaaggataaatagatctttacttatggacaattcataattgacatcataattgttgtcttccaaacatttacctacgga 15521135  T
Q  624 a 624  Q
    |    
T  15521134 a 15521134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 469 - 624
Target Start/End: Complemental strand, 15515950 - 15515795
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    ||||||||  ||||| || ||| ||||||||||| |||||||||||||||||||  ||| ||||||||||||||  |||  |||||||||| ||||||||    
T  15515950 tccaacaccgtttatagtaatagacaattaaattttagttaaatatataagcaagggtttaaacatgacttttagttacggataaatagacctttactta 15515851  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaa 624  Q
    |||||| |||||||||||||| | | |||||||||||||||| |||||||| ||||    
T  15515850 tggacaattcataattgacagcataattgttgtcttccaaacatttacctacggaa 15515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 469 - 636
Target Start/End: Complemental strand, 14570408 - 14570241
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    ||||||||||||||| |||| |||||||||| |||||||| ||||||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||| |    
T  14570408 tccaacactatttatggtgacaaacaattaagttgtagttcaatatatgagcaatgattcaaacataacttttacctacataaaaatagacatttactca 14570309  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacattta 636  Q
    || | | | |||||||||||||||| ||| ||  ||  | |  ||||||||||||||| |||||||||    
T  14570308 tgaataatgcataattgacagtaaaattgatgcattttagaactttacctatggaaaattgacattta 14570241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 641
Target Start/End: Complemental strand, 36855342 - 36855236
Alignment:
Q  535 gacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatt 634  Q
    |||||||||| ||| ||||||| |||||||| |||| | | | |||||||||||| ||| ||| |||||| || ||||||||||| ||||||| ||||||    
T  36855342 gacttttacccacagataaataaacatttacctatgaataatgcataattgacagcaaaattgctgtctttcagacttttacctacggaaaaaggacatt 36855243  T
Q  635 taatgac 641  Q
    || ||||    
T  36855242 tagtgac 36855236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 642
Target Start/End: Complemental strand, 5069216 - 5069100
Alignment:
Q  526 ttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaa 625  Q
    |||||||||||||||||| |||||| ||||| |||||||   ||| ||| | |||||||||||  ||| |||| ||||| ||||||||||| || | |||    
T  5069216 ttcaaacatgacttttacatacaaacaaataaacatttatccatgaacaatgcataattgacaacaaaattgtagtctttcaaacttttacttacgaaaa 5069117  T
Q  626 aatgacatttaatgacg 642  Q
    | ||| |||||||||||    
T  5069116 attgatatttaatgacg 5069100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 641
Target Start/End: Complemental strand, 969715 - 969547
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||| |||||| |||||||| |||||| ||||||||||||||||  |||  ||||||    ||||||||| ||||  | || |||||| ||||  |    
T  969715 tccagcaccatttatagtgataaataattaagttgtagttaaatatatgtgcatatgttca----tgacttttaactacggacaattagacacttacaca 969620  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgac 641  Q
    |||||| |  ||||||||||||||| ||||||||||| | ||||| | |||  | ||||||||||||| ||||    
T  969619 tggacaatgaataattgacagtaaaattgttgtcttctagactttaatctactggaaaatgacatttattgac 969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 14791097 - 14791026
Alignment:
Q  472 aacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttac 543  Q
    ||||| |||||  ||||||||  ||||| || |||||||||||||||||| | ||||||||| |||||||||    
T  14791097 aacaccatttaaagtgataaatgattaagttttagttaaatatataagcattggttcaaacacgacttttac 14791026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 3744992 - 3745066
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattg-ttcaaacatgactttta 542  Q
    |||||||||||||||  | ||| |||||||| |||||||||||||||| || || || ||||||||||| |||||    
T  3744992 tccaacactatttatattcatagacaattaagttgtagttaaatatatgagtaaatgattcaaacatgattttta 3745066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 474 - 619
Target Start/End: Original strand, 10385308 - 10385453
Alignment:
Q  474 cactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggac 573  Q
    |||||||||  || ||| |||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||  | |||||||| |||||||||||||    
T  10385308 cactatttacagttatagacaattaagttgtagttaaatatataaataatggttcaaacatgacttttacctacggacaaatagacctttacttatggac 10385407  T
Q  574 agttcataattgacagtaaagttgttgtcttccaaacttttaccta 619  Q
    | |||||||||||||  ||| ||| |||||||||||||||||||||    
T  10385408 aattcataattgacaacaaaattgctgtcttccaaacttttaccta 10385453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5764080 - 5764244
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5764080 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5764172  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5764173 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5764244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5767615 - 5767779
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5767615 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5767707  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5767708 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5767779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5771150 - 5771314
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5771150 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5771242  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5771243 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5771314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5774685 - 5774849
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5774685 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5774777  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5774778 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5774849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5778220 - 5778384
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5778220 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5778312  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5778313 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5778384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5781755 - 5781919
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5781755 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5781847  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5781848 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5781919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5785290 - 5785454
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5785290 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5785382  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5785383 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5785454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5788825 - 5788989
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5788825 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5788917  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5788918 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5788989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5792360 - 5792524
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5792360 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5792452  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5792453 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5792524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5795895 - 5796059
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5795895 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5795987  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5795988 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5796059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5799430 - 5799594
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5799430 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5799522  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5799523 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5799594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5802965 - 5803129
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5802965 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5803057  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5803058 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5803129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5806500 - 5806664
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5806500 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5806592  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5806593 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5806664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5810035 - 5810199
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5810035 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5810127  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5810128 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5810199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5813570 - 5813734
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5813570 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5813662  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5813663 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5813734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 5817105 - 5817269
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    |||| ||||||| || |||||| ||| |||| ||| ||||||||||| || |||| |||||||||||| ||||||       | ||||||| ||||||||    
T  5817105 tccagcactattaatagtgatagacatttaagttgcagttaaatatacaaacaatagttcaaacatgatttttac-------tgaatagacctttactta 5817197  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatga 640  Q
    | |||| |||||||||||||| ||| |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  5817198 ttgacaattcataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5817269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 650
Target Start/End: Original strand, 6120031 - 6120177
Alignment:
Q  504 tagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtct 603  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||  | ||| | |  ||||||||||||||| | ||||  |    
T  6120031 tagttaaatatacaagcaatggttcaaacatgacttttacccacaactaattagacatttaccgacggataatgtataattgacagtaaaatagttgaat 6120130  T
Q  604 tccaaacttttacctatggaaaaatgacatttaatgacggatgttgt 650  Q
    ||   |||| |||| | |||||||||||||||| |||| ||| ||||    
T  6120131 tctggacttctacccaaggaaaaatgacatttagtgaccgattttgt 6120177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 593
Target Start/End: Original strand, 10121064 - 10121181
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    ||||||||||||||| |||| | |||||||| |||||||||||||||| ||||||  ||||||||      ||||||||||| ||||||| |||||||||    
T  10121064 tccaacactatttatggtgacagacaattaagttgtagttaaatatatgagcaatgattcaaaca------ttacctacaaa-aaatagatatttactta 10121156  T
Q  569 tggacagttcataattgacagtaaa 593  Q
    || | | | ||||||||||| ||||    
T  10121157 tgaataatacataattgacaataaa 10121181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 663
Target Start/End: Complemental strand, 9860237 - 9860126
Alignment:
Q  552 aaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggatgttgta 651  Q
    |||||||||||||| ||  |||| | ||| |||||||||||| | ||||  ||| ||||||||||||| ||||||| || ||||||||| |||| ||||     
T  9860237 aaatagacatttacctacagacaatgcatcattgacagtaaaatagttgaattctaaacttttacctacggaaaaaagatatttaatgaaggattttgtc 9860138  T
Q  652 tgtagatacaag 663  Q
    ||||| ||||||    
T  9860137 tgtaggtacaag 9860126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 487 - 656
Target Start/End: Complemental strand, 14615049 - 14614880
Alignment:
Q  487 gataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattga 586  Q
    |||||| ||||||||||||||||||||||| | ||  || || ||||||||||||||||||| | || |||||| |||| |||||| | |  ||||||||    
T  14615049 gataaataattaaattgtagttaaatatatgaacatatgctcgaacatgacttttacctacagacaattagacacttacatatggataatgaataattga 14614950  T
Q  587 cagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggatgttgtatgtag 656  Q
    |   ||| ||||||||||||| |||||||||||   |||||||||||||| ||||  || ||||||||||    
T  14614949 cgacaaaattgttgtcttccatacttttacctacaaaaaaatgacatttattgacaaattttgtatgtag 14614880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 469 - 662
Target Start/End: Original strand, 11021194 - 11021378
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    ||||| ||||||||| |||| | || |||||||||||||||||||| | || |||  |||||||| || ||||||||||| || |||||| |||||||||    
T  11021194 tccaatactatttatggtgacagacgattaaattgtagttaaatatgtgagtaatgattcaaacaagatttttacctacagatgaatagatatttactta 11021293  T
Q  569 tggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacggatgttgtatgtagatacaa 662  Q
    ||        ||||||||||||||| ||  || |||  | || |||||||||| |||| ||| |||||||||||||| |||  |||||||||||    
T  11021294 tg-------tataattgacagtaaaatttatgccttttagacctttacctatgaaaaattgatatttaatgacggattttg--tgtagatacaa 11021378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 492 - 636
Target Start/End: Complemental strand, 26515818 - 26515680
Alignment:
Q  492 acaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagta 591  Q
    |||| |||||||||||||||||||||| |||| |||||||||||||||||||      | |||||| ||| ||  |||||||| | |||||||||||  |    
T  26515818 acaactaaattgtagttaaatatataaacaatggttcaaacatgacttttac-----gacaaatagccatgtatctatggacaatgcataattgacaaca 26515724  T
Q  592 aagttgttgtcttccaaacttttacctatggaaaaatgacattta 636  Q
    || |||||||||| ||||||| ||||||  |||||| ||||||||    
T  26515723 aaattgttgtctttcaaacttctaccta-cgaaaaaggacattta 26515680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 636
Target Start/End: Original strand, 27222768 - 27222896
Alignment:
Q  507 ttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttcc 606  Q
    |||||||||| || ||| ||||||||||||| ||||| || ||||||||||||||||| ||||||||| |  ||||| ||||  ||| || || ||| ||    
T  27222768 ttaaatatatgagtaatggttcaaacatgacatttacttataaataaatagacatttatttatggacaatgaataatggacaacaaaattatt-tctacc 27222866  T
Q  607 aaacttttacctatggaaaaatgacattta 636  Q
    | |||| |||||| | ||||||||||||||    
T  27222867 agacttatacctacgaaaaaatgacattta 27222896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 586
Target Start/End: Original strand, 50399883 - 50399968
Alignment:
Q  501 ttgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattga 586  Q
    |||||||||||||||| |||||| |||| ||||||| ||||| ||||| | |||||||||||||| |||||| | || ||||||||    
T  50399883 ttgtagttaaatatatgagcaatggttctaacatgatttttatctacagaaaaatagacatttacctatggataatttataattga 50399968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 492 - 588
Target Start/End: Complemental strand, 9302204 - 9302108
Alignment:
Q  492 acaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgaca 588  Q
    |||||||| ||||||| |||||||  ||||||||||||||||| ||||||||||||||| |||   |||||||| ||| |||| |  ||||||||||    
T  9302204 acaattaagttgtagtgaaatatactagcaattgttcaaacataacttttacctacaaagaaacgaacatttacctatagacaatggataattgaca 9302108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 619
Target Start/End: Original strand, 13017734 - 13017874
Alignment:
Q  479 tttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttc 578  Q
    ||||| |||| | |||| ||| ||||||||||||||||||||||   ||||||||  ||||||| |||||   |||||||||||||  |||||||||| |    
T  13017734 tttatagtgacatacaactaagttgtagttaaatatataagcaacgattcaaacactacttttatctacagtcaaatagacatttatctatggacagtgc 13017833  T
Q  579 ataattgacagtaaagttgttgtcttccaaacttttaccta 619  Q
     |||||||||  ||| |||||||| |  | |||||||||||    
T  13017834 ctaattgacatcaaaattgttgtcatttagacttttaccta 13017874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 593
Target Start/End: Complemental strand, 8287237 - 8287054
Alignment:
Q  410 acaatttggaggcc-ggttacatacttgacaatgttcatttaaaaagaattgnnnnnnnntccaacactatttattgtgataaacaattaaattgtagtt 508  Q
    |||||| ||||||| ||||||| | |||||||| |||||||||||| |||||        ||||||||||||||| | || | |||||||| |||||||     
T  8287237 acaattcggaggcctggttacaaatttgacaattttcatttaaaaataattgaaaaaaa-tccaacactatttatggcgacagacaattaagttgtagtc 8287139  T
Q  509 aaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaa 593  Q
    |||||||| |  |||  || ||||||||| |||||||| | ||||||| ||||||||||| ||| |   ||||||||||| ||||    
T  8287138 aaatatatgactaatgatttaaacatgacctttacctatagataaataaacatttacttaaggagacggcataattgacactaaa 8287054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 641
Target Start/End: Complemental strand, 8904829 - 8904724
Alignment:
Q  535 gacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatt 634  Q
    |||||||||| ||| | |||||||||||||| |||||| | | |||||||||| ||||| ||| ||||||    ||||||| ||| ||||||||||||||    
T  8904829 gacttttacccacagacaaatagacatttacctatggataatgcataattgacggtaaaattgatgtctt-tggacttttatctacggaaaaatgacatt 8904731  T
Q  635 taatgac 641  Q
    |||||||    
T  8904730 taatgac 8904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 35844050 - 35843972
Alignment:
Q  492 acaattaaattgt-agttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttacttat 569  Q
    |||||||| |||| ||||||||||| ||||||| |||||||| | ||||||||||||||| ||||||| ||||| ||||    
T  35844050 acaattaagttgttagttaaatatacaagcaatcgttcaaacgttacttttacctacaaacaaatagatatttatttat 35843972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 650
Target Start/End: Complemental strand, 3823886 - 3823765
Alignment:
Q  526 ttcaaacatgacttttacctacaaataaatagacatttacttatggacagttcataattgacagtaaagttgttgtcttccaaacttttacctatggaaa 625  Q
    ||||||||| ||||||||||| | || ||||||||||||||||| |||| | |||| |||||| |||| ||||| | || || |||||||||||  ||||    
T  3823886 ttcaaacataacttttaccta-agatgaatagacatttacttat-gacaatacatagttgacaataaaattgttatatttcagacttttaccta-cgaaa 3823790  T
Q  626 aatgacatttaatgacggatgttgt 650  Q
    ||||||||||| ||| |||| ||||    
T  3823789 aatgacatttagtgatggattttgt 3823765  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 41151382 - 41151311
Alignment:
Q  504 tagttaaatatataagcaattg-ttcaaacatgacttttacctacaaataaatagacatttacttatggaca 574  Q
    |||||||||||| |||||| || ||||||||| ||||||||| ||||| |||||||||||||| || |||||    
T  41151382 tagttaaatatacaagcaaatggttcaaacataacttttacccacaaacaaatagacatttacctacggaca 41151311  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 644
Target Start/End: Original strand, 27232310 - 27232376
Alignment:
Q  578 cataattgacagtaaagttgttgtcttccaaacttttacctatggaaaaatgacatttaatgacgga 644  Q
    ||||||||||| ||||||||||||||| ||  |||||||||| |||||||  ||||||| |||||||    
T  27232310 cataattgacaataaagttgttgtctttcagtcttttacctacggaaaaaatacatttagtgacgga 27232376  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 619
Target Start/End: Original strand, 45059352 - 45059491
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctacaaataaatagacatttactta 568  Q
    ||||||| ||||||| |||||| |||||||| |||||||||||||||            |||||||||||||||||||   ||||||| || ||||||||    
T  45059352 tccaacattatttatagtgatagacaattaagttgtagttaaatata------------caaacatgacttttacctatggataaataaacctttactta 45059439  T
Q  569 tggacagttcataattgacagtaaagttgttgtctt-ccaaacttttaccta 619  Q
    || ||| ||||||||| |||  | | |||||||||| |||||| ||||||||    
T  45059440 tgaacaattcataattaacaacataattgttgtcttcccaaacctttaccta 45059491  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 543
Target Start/End: Complemental strand, 30518826 - 30518752
Alignment:
Q  469 tccaacactatttattgtgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttac 543  Q
    |||||||| | |||| || ||||| |||||| |||||||||| ||||| || | | |||||||||||||||||||    
T  30518826 tccaacaccacttatagttataaataattaagttgtagttaattatatgagtattggttcaaacatgacttttac 30518752  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 548
Target Start/End: Original strand, 44725218 - 44725280
Alignment:
Q  486 tgataaacaattaaattgtagttaaatatataagcaattgttcaaacatgacttttacctaca 548  Q
    ||||||| |||||| ||||||||||||| || || |  |||||||||||||||||||| ||||    
T  44725218 tgataaataattaagttgtagttaaatacatgagtatatgttcaaacatgacttttacttaca 44725280  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 565
Target Start/End: Complemental strand, 17985735 - 17985695
Alignment:
Q  525 gttcaaacatgacttttacctacaaataaatagacatttac 565  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  17985735 gttcaaacatgatttttatctacaaacaaatagacatttac 17985695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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