View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19784_low_2 (Length: 491)
Name: NF19784_low_2
Description: NF19784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19784_low_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 7950507 - 7950104
Alignment:
| Q |
16 |
actgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgaca |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||| |
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| T |
7950507 |
actgacataagttaggatgttcctcaaccatcttcataacagttggagatgatggatatgtacaataacctgcaactagtccaatagggatgcaacgaca |
7950408 |
T |
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| Q |
116 |
atcgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaacaatctgttgctccaaccttctttgtcggaaccaatgctgtaaatgacaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7950407 |
atcgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaacaatctgttgctccaaccttcttcgtcggaaccaatgctgtaaatgacaca |
7950308 |
T |
|
| Q |
216 |
tagacaattagagctggaagnnnnnnnnncatacaattacttgaaataataaattagtggtaaattttagagaactagagaaggatttcatatgtaagta |
315 |
Q |
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| T |
7950307 |
tagacaattagagctggaa----aaaaaacatacaattacttgaaataataaattagtggtaaattttagagaattagagaaggatttcatatgtaagta |
7950212 |
T |
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| Q |
316 |
gtattagcgacagaaatcagtgacataaaaaatgaaaccctctcgaatttcctcgtcacaaaatttagtatgtaattagagaggaattttaggttttcac |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
7950211 |
gtattagcgacagaaatcagtgacataaaaaatgaaaccctctcgaatttcctcgtcacaaaatttagtatgtaattagagaggaattttacgtttttcc |
7950112 |
T |
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| Q |
416 |
tctctgaa |
423 |
Q |
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|||||||| |
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| T |
7950111 |
tctctgaa |
7950104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 7950069 - 7950004
Alignment:
| Q |
426 |
atatgacagtgtgtactgcactactggtgagaaatatggttaaaatacatacagaatgcggcaagc |
491 |
Q |
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| T |
7950069 |
atatgacagtgtatactgcactactggtgagaaatatggttaaaatacatacagaatgcggcaagc |
7950004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 7941536 - 7941384
Alignment:
| Q |
18 |
tgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaat |
117 |
Q |
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| T |
7941536 |
tgacataagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccaattagtataacaggaatgcaacggcagc |
7941437 |
T |
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| Q |
118 |
cgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaacaatct |
170 |
Q |
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||| ||| ||||||||||||||||||| || |||||| |||| |||||||| |
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| T |
7941436 |
tgcttgaaggacatggtggcatctcaaacggcgaacaaatacccaaacaatct |
7941384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 7947087 - 7946939
Alignment:
| Q |
18 |
tgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaat |
117 |
Q |
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| T |
7947087 |
tgacataagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccagctagtacaagtggaatgcaacgacagt |
7946988 |
T |
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| Q |
118 |
cgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaaca |
166 |
Q |
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||| || ||||||||||||||| |||||| |||||| ||||||||| |
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| T |
7946987 |
tgcttgagggacatggtggcatctgaaatggcgaacaaatacccgaaca |
7946939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 7941128 - 7941087
Alignment:
| Q |
450 |
tggtgagaaatatggttaaaatacatacagaatgcggcaagc |
491 |
Q |
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| T |
7941128 |
tggtgagaaataaggttaaaatacatacaaaatgtggcaagc |
7941087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 29473355 - 29473387
Alignment:
| Q |
353 |
ccctctcgaatttcctcgtcacaaaatttagta |
385 |
Q |
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| T |
29473355 |
ccctctctaatttcctcgtcacaaaatttagta |
29473387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 6785919 - 6786076
Alignment:
| Q |
16 |
actgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgaca |
115 |
Q |
| |
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|||| ||||| || ||||||||||| ||||||||||||| || || || ||||||| | || ||||||||| ||| || ||||||||||||||| |
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| T |
6785919 |
actggcataaattaggatgttcctcgaccatcttcataatagatg---atattggatttatgcagaaacctccaattagcgcaatagggatgcaacgaca |
6786015 |
T |
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| Q |
116 |
atcgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaacaatctgttgct |
176 |
Q |
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| T |
6786016 |
atcgctagagcgacatggtggcatctcaaatggcgaacaaatacccgaacagtctgctgct |
6786076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 6803077 - 6803171
Alignment:
| Q |
16 |
actgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaa |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || | || |||||| |||||| | ||| |||||||||| |
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| T |
6803077 |
actgacataagttaggatgttcctcaaccatcttcataacagttggggatgatgcatgcgagcagtaacctacaactaaaaaaagagggatgcaa |
6803171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 30137353 - 30137393
Alignment:
| Q |
451 |
ggtgagaaatatggttaaaatacatacagaatgcggcaagc |
491 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
30137353 |
ggtgagaaagatggttgaaatacatacagaatgcggcaagc |
30137393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 30143482 - 30143522
Alignment:
| Q |
451 |
ggtgagaaatatggttaaaatacatacagaatgcggcaagc |
491 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30143482 |
ggtgagaaagatggttgaaatacatacagaatgcggcaagc |
30143522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 30146904 - 30146944
Alignment:
| Q |
451 |
ggtgagaaatatggttaaaatacatacagaatgcggcaagc |
491 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30146904 |
ggtgagaaagatggttgaaatacatacagaatgcggcaagc |
30146944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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