View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19784_low_3 (Length: 273)
Name: NF19784_low_3
Description: NF19784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19784_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 8953287 - 8953022
Alignment:
| Q |
1 |
ttatttttatttttgaagaagatcgtcaaaatagaattgcttgctaatagtcatgttgagctttatgacnnnnnnnn-agtcgtttatcctatgggatca |
99 |
Q |
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| T |
8953287 |
ttatttttatttttgaagaagatcgtcaaaatagaattgcttgttaatagtcatgttgagctttatgacattttttttagtcgtttatcctatggaatca |
8953188 |
T |
|
| Q |
100 |
atttatgtttttatgaaatagatttgataatctacaaaattgttgataatctaccaactctaacaattcaaaaatga---ctctgcttctattattgcta |
196 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8953187 |
atttatgtttttatgaaatagatttcataatctacaaaattgttgataatctaccaactctaacaattcaaaaatgactcctctgcttctattattgcta |
8953088 |
T |
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| Q |
197 |
atc---atataggcaaatgtattcatgtacatgtatattgaaatatggatttgaagtaaaatatgt |
259 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8953087 |
atcaagatataggcaaatgtattcatgtacatgtatattgaaatatggatttgaagtaaaatatgt |
8953022 |
T |
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