View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19785_high_1 (Length: 554)
Name: NF19785_high_1
Description: NF19785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19785_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 502
Target Start/End: Complemental strand, 26495552 - 26495059
Alignment:
| Q |
14 |
catcatcatcggaaaggcacggtggtgcgcgttccggcaaagattgtgccatggaagagtggtggtgctgttggtgtggtttccatgaaggtgttggatc |
113 |
Q |
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| T |
26495552 |
catcatcatcggaaaggcacggtggtgcgcgttccggcaaagattgtgccatggaagagtggtggtggtgttggtgtggtttccatgaaggtgttggatc |
26495453 |
T |
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| Q |
114 |
ctatgatgaggagggaattggctataaggagagttttggaggatggtgatgagaaatgtttgagggagtattggctttttggaaccaaaaggggtgatat |
213 |
Q |
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| T |
26495452 |
ctatgatgaggagggaattggctataaggagagttttggaggatggtgatgagaaatgtttgagggagtattggctttttggaaccaaaaggggtgatat |
26495353 |
T |
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| Q |
214 |
aattttcacacaatgttggactcctctttctgttaagattaggtatgtttataggtttggattcttcaataatcatagttttcattattataataatcaa |
313 |
Q |
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| T |
26495352 |
aattttcacacaatgttggactcctctttctgttaagattaggtatgtttataggtttggattcttcaataatcatagtttttattattataataatcaa |
26495253 |
T |
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| Q |
314 |
ataatcgtgtttgattctattgaccttgtgtttgaaaaattatgatttatgaattacgaggcacagacacttctaggattaggagacaagattaggcgtg |
413 |
Q |
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| T |
26495252 |
ataattttgtttgagtctattgaccttgtgtttgaaaaattatgatttatgagctacgaggcacggacacttctaggattaggagacaggattaggcgtg |
26495153 |
T |
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| Q |
414 |
tctccgtat-----cagacacgtgttgtgtctgacaccgatgtgtccctgttcatagtttatgactcatttttaatttatccatagagggatat |
502 |
Q |
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| T |
26495152 |
tctccgtatcagatcagacacgtgttgtgtctgacacctacgtgtccctgttcatagtttatgcgtcatttttaatttatccatacagggatat |
26495059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 3951499 - 3951544
Alignment:
| Q |
403 |
gattaggcgtgtctccgtatcagacacgtgttgtgtctgacaccga |
448 |
Q |
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| T |
3951499 |
gattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccga |
3951544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 28524534 - 28524490
Alignment:
| Q |
402 |
agattaggcgtgtctccgtatcagacacgtgttgtgtctgacacc |
446 |
Q |
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| T |
28524534 |
agattaggcgtgtttctgtgtcagacacgtgttgtgtccgacacc |
28524490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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