View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19785_high_3 (Length: 237)
Name: NF19785_high_3
Description: NF19785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19785_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32802875 - 32803097
Alignment:
| Q |
1 |
aagcataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32802875 |
aagcataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccagttgaacct |
32802974 |
T |
|
| Q |
101 |
ggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802975 |
ggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagag |
32803074 |
T |
|
| Q |
201 |
taacattagctacagagccactt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32803075 |
taacattagctacagagccactt |
32803097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32809437 - 32809635
Alignment:
| Q |
1 |
aagcataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacct |
100 |
Q |
| |
|
|||||||| | |||| ||| |||||||||||||||||||| ||||| ||| || || || ||||||||| ||||||||||| |||| || | ||| |
|
|
| T |
32809437 |
aagcataaaaagtcctactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccaggtacactataaggccaatcgaa--- |
32809533 |
T |
|
| Q |
101 |
ggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagag |
200 |
Q |
| |
|
||| |||| ||||||| ||| ||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
32809534 |
------gcatgaccgagtagaaacttcctagttaaggacaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagag |
32809624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 16579017 - 16578814
Alignment:
| Q |
4 |
cataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggt |
103 |
Q |
| |
|
||||||||||||| | |||| | || ||||||||||| || |||||||| || || || || || || | ||||||||| || ||||||| ||||| |
|
|
| T |
16579017 |
cataacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaagtacactgtgagtccggttgcgcctgga |
16578918 |
T |
|
| Q |
104 |
ggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaa |
203 |
Q |
| |
|
|||||||| || |||||||| | |||||||| || | ||| |||||||| ||||||||||||||||| || || || |||| |||||||||||| |||| |
|
|
| T |
16578917 |
ggagcaggtcctggtagaaaagctccggttaatgatagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgcaggttgtctaagggtaa |
16578818 |
T |
|
| Q |
204 |
catt |
207 |
Q |
| |
|
|||| |
|
|
| T |
16578817 |
catt |
16578814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University