View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19785_low_3 (Length: 435)
Name: NF19785_low_3
Description: NF19785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19785_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 2 - 430
Target Start/End: Complemental strand, 53564071 - 53563643
Alignment:
| Q |
2 |
cattttagcatacatccgatgtgcaccattcacatcatgcaactcagctatgcatccaaaaattgaattgaaagtagatgcattaggagcaacccctttc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53564071 |
cattttagcatacatccgatgtgcaccattcacatcatgcaactcagctatgcatccaaaaattgaattgaaagtagatgcattaggagcaacccctttc |
53563972 |
T |
|
| Q |
102 |
ttaaccattgtatcaagtaccttcacagcttcatccagattctcatccttgcaatgactctcaattaagaaattatagctaatcgtatcagcagcacaac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53563971 |
ttaaccattgtatcaagtaccttcacagcttcatccagattctcatccttgcaatgactctcaattaagaaattatagctaatcgtatcagcagcacaac |
53563872 |
T |
|
| Q |
202 |
caagcctcttcatttgattataaacctgcaagaccttttcagtcctaccagctttcacatgaaccctcataagactgttaaaagtaacagcattaggatt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53563871 |
caagcctcttcatttgattataaacctgcaagaccttttcagtcctaccagctttcacatgaaccctcataagactgttaaaagtaacagcattaggatc |
53563772 |
T |
|
| Q |
302 |
gcaaccagcatcaatcatctcagagaaaacatcatgagcacgagtaatttgcccacaccgacagagcgaatcaatcacaatgctataagtataaacatta |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53563771 |
gcaaccagcatcaatcatctcagagaaaacatcatgagcacgagtaatttgcccacaccgacagagcgaatcaatcacaatgctataagtataaacatta |
53563672 |
T |
|
| Q |
402 |
ggctttacaccagcctccttcatctcact |
430 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
53563671 |
ggctttacaccagcctccttcatatcact |
53563643 |
T |
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