View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19785_low_5 (Length: 250)
Name: NF19785_low_5
Description: NF19785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19785_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32802861 - 32802609
Alignment:
| Q |
1 |
ttactaatgctacttatgagagacttccacttgatgacgatgataatgataataatgaagggcctaattctgcaggcggtgtgcaaggtggaggagtgtc |
100 |
Q |
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| T |
32802861 |
ttactaatgctacttatgagagacttccacttgatgacgatgataatgataataatgaagggcctaattctgcaggcggtgtgcaaggtggaggagcgtc |
32802762 |
T |
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| Q |
101 |
---tggtggatcgcctccaccaggaattggtcatcagttgcagggtgggcttccagatccttcttccatgcctttgtataatttgccaccaaatttgttg |
197 |
Q |
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| T |
32802761 |
gactggtggatcgcctccaccaggaattggtcatcagttgcagggtgggcttccagatccttcttccatgcctttgtataatttgccaccaaatttgttg |
32802662 |
T |
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| Q |
198 |
cctaataatggagggcagatgggacatgaggctcttgtctgtgctgctcctca |
250 |
Q |
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| T |
32802661 |
cctaataatggagggcagatgggacatgaggctcttgcctgggctgctgctca |
32802609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32809423 - 32809195
Alignment:
| Q |
1 |
ttactaatgctacttatgagagacttccacttgatgacgatgataatgataataatgaagggcctaattctgcaggcggtgtgcaaggtggaggagtgtc |
100 |
Q |
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| T |
32809423 |
ttactaatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaaaacctagttctg-tggcgctgtgcattgtggaggaacgtc |
32809325 |
T |
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| Q |
101 |
tggtggatcgcctccaccaggaattggtcatcagttgcagggtgggcttccagatccttcttccatgcctttgtataatttgccaccaaatttgttgcct |
200 |
Q |
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| T |
32809324 |
tggtggatcgccttcgccggtaattgtctattagttgtagggtggacttccagacccttct---atgcttttgtacaatttgcctccaaatttgatgcct |
32809228 |
T |
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| Q |
201 |
aataatggagggcagatgggacatgaggctcttg |
234 |
Q |
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| T |
32809227 |
-acaatggagggcatatgggacatgaggctcttg |
32809195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 16579204 - 16579248
Alignment:
| Q |
147 |
cttccagatccttcttccatgcctttgtataatttgccaccaaat |
191 |
Q |
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| T |
16579204 |
cttccagatccatcttctatgcctttgtataatttgccaccaaat |
16579248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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