View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_12 (Length: 631)
Name: NF19786_high_12
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 254 - 628
Target Start/End: Original strand, 4857630 - 4858004
Alignment:
| Q |
254 |
gtgttaatactagcaataaacctttcaatgaaaaacaataacattatgaaagaaactgtaaaacatagggtctcaaaatgaattacttacttacaaaatt |
353 |
Q |
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| T |
4857630 |
gtgttaatactagcaataaacctttcaatgaaaaacaataacattatgaaagaaactgtaaaacatagggtctcaaaatgaattacttacttacaaaatt |
4857729 |
T |
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| Q |
354 |
tgatgtattaagaatgagggttgtaagctattacttgtattctattaaagtagcattttacaaagattttaacaaagaaataatcatgtcctgagcaaaa |
453 |
Q |
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| T |
4857730 |
tgatgtattaagaatgagggttgtaagctattacttgtattctattaaagtagcattttacaaagattttaacaaagaaataatcatgtcctgagcgaaa |
4857829 |
T |
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| Q |
454 |
accagatcagctcttaacagtttaagcggttccatgacaaaatcgtttatacatttgttccaagaagctggtccgtgcggctataattgaatgattttaa |
553 |
Q |
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| T |
4857830 |
accagatcagctcttaacagtttatgcggttccatgagaaaatcgtttatacatttgttccaagaagctggtccgagcggctataattgaacgattttaa |
4857929 |
T |
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| Q |
554 |
caactatgttcaattatttgttagatttgcaagagaatagggcacctagaacaaacttgtgtcctacaaaattta |
628 |
Q |
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| T |
4857930 |
caactatgttcaattatttgttagatttgcaagagaatagggcacctagaacaaacttgtgtcctacaaaattta |
4858004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 4857478 - 4857581
Alignment:
| Q |
102 |
tgtaattaaaaatataagagattattaatgaacccaggttcaacagctaattgtaatctcatggatataaacaaagtaagatacattgacattcgaggta |
201 |
Q |
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| T |
4857478 |
tgtaattaaaaatataagagattattaatgagcccaggttcaacagctaattgtaatctcatggatataaacaaagtaagatacattgacattcgaggta |
4857577 |
T |
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| Q |
202 |
tgag |
205 |
Q |
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|||| |
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| T |
4857578 |
tgag |
4857581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 541 - 631
Target Start/End: Complemental strand, 5176867 - 5176777
Alignment:
| Q |
541 |
tgaatgattttaacaactatgttcaattatttgttagatttgcaagagaatagggcacctagaacaaacttgtgtcctacaaaatttacag |
631 |
Q |
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| T |
5176867 |
tgaacgattttaacaactatgctcaattatttgtttgattttcaagagaatagtgcacctagaacaaacttgtgtcctacaaattttacag |
5176777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 5163062 - 5162989
Alignment:
| Q |
270 |
taaacctttcaatgaaaaacaataacattatgaaagaaactgtaaaacatagggtctcaaaatgaattacttac |
343 |
Q |
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| T |
5163062 |
taaacctttcaatgaaaaacaataacattatgaaagaaaccgtaaaacatagggtctcataatgaattacttac |
5162989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 5184888 - 5184814
Alignment:
| Q |
270 |
taaacctttcaatgaaaaa-caataacattatgaaagaaactgtaaaacatagggtctcaaaatgaattacttac |
343 |
Q |
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| T |
5184888 |
taaacctttcaatgaaaaaacaataacattatgaaagcaactgtaaaacgtagggtctcataatgaattacttac |
5184814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 5163189 - 5163121
Alignment:
| Q |
137 |
aggttcaacagctaattgtaatctcatggatataaacaa---agtaagatacattgacattcgaggtat |
202 |
Q |
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| T |
5163189 |
aggttcaacaactaattgtaatctcatggatataaacaaattagtaagatacattgacattcgaggtat |
5163121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 590 - 628
Target Start/End: Original strand, 5132751 - 5132789
Alignment:
| Q |
590 |
atagggcacctagaacaaacttgtgtcctacaaaattta |
628 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
5132751 |
atagtgcacctagaacaaacttgtgtcctacaaaattta |
5132789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 5163469 - 5163420
Alignment:
| Q |
18 |
gtgtggcaagtaatgctgaattttgaaagcacggtggtgacgactcctct |
67 |
Q |
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| T |
5163469 |
gtgttgcaagtgatgctgaatttttaaagcatggtggtgacgacttctct |
5163420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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