View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_20 (Length: 574)
Name: NF19786_high_20
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_20 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 96 - 505
Target Start/End: Original strand, 4925515 - 4925924
Alignment:
| Q |
96 |
tgaatgataaatttcaattcttatttttgtgctggtggttgtgaggtcgaagaaactactcgacacacttgttttttgattgcttatggtttactgtgt- |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||| || | |||| || || |
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|
| T |
4925515 |
tgaatgataaatttcagttcttatttttgtgcctgtggttgtgaggttgaagaaaatactc--cacacttgttttttgattg-ttcttgttttttgagtt |
4925611 |
T |
|
| Q |
195 |
gctagggtaatggcaacattttcggtataagctttcactatgatttgaattattggtgagattattcaaatataatgtattactatagctcagtctatgc |
294 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||| ||||||| | |
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|
| T |
4925612 |
gctagggtattggcaacatttttggtaaaagctttcactatgacttgaattattggtgagatcattcaaatataatgtgttactacagctgagtctatcc |
4925711 |
T |
|
| Q |
295 |
aatgtata--tattgttacctgtattctctatttgtgatggaacctaaatcatatctccggaagagtgataacactactggttttaccgagtctgagata |
392 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| | |||||||||| |||||| |||| |
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|
| T |
4925712 |
aatgtatatatattgttacctgtattctaagtttgtgatggaacctaaatcatatctcatgaagtgtgataatattactggtttttttgagtctccgata |
4925811 |
T |
|
| Q |
393 |
taagaatcattgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaa |
492 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4925812 |
taagaatcattgcccaaagtcctcaattctatagttgaaatgaatggagtccctttgcctgttttaacaagacatggttgtatgtaatcttttgatggaa |
4925911 |
T |
|
| Q |
493 |
agtaaatgatctc |
505 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4925912 |
tgtaaatgatctc |
4925924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 399 - 550
Target Start/End: Original strand, 4777134 - 4777285
Alignment:
| Q |
399 |
tcattgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaa |
498 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
4777134 |
tcattgttcaaaggcctcaattctatagccgaaatgaatggagtcccttggcctgtgttaacaagacatggttgtatgtaatcttgtgatggactgtaaa |
4777233 |
T |
|
| Q |
499 |
tgatctcactgaatcttatgcgtgatgcattggggaacttaacagtaaccca |
550 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||||| |||||| |||| |
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|
| T |
4777234 |
tgatctcattgaatctcatacgtgatgcattggggaacttcacagtatccca |
4777285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 4688529 - 4688421
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
4688529 |
attgttcaaagtcctcaattctatagatgaaatgaatggagtcccgttgcctgtgttaacaagacatggttgtatgtaatcttgtgatggagtgtaaatg |
4688430 |
T |
|
| Q |
501 |
atctcactg |
509 |
Q |
| |
|
||||||||| |
|
|
| T |
4688429 |
atctcactg |
4688421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 4725793 - 4725685
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
4725793 |
attgttcaaagtcctcaattctatagctgaaatgaatggagtccctttgtctgtgttaacaagacatggttgtatgtaatctagtgatggagtgtaaatg |
4725694 |
T |
|
| Q |
501 |
atctcactg |
509 |
Q |
| |
|
||||||||| |
|
|
| T |
4725693 |
atctcactg |
4725685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 391 - 505
Target Start/End: Complemental strand, 10446289 - 10446175
Alignment:
| Q |
391 |
tataagaatcattgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatgg |
490 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10446289 |
tataagtattattgttcaaagtcctcaattctatagctgaaatgaatggaatccctttgcctgtgttaacaagacatggttgtatgtaatcttgtgatgg |
10446190 |
T |
|
| Q |
491 |
aaagtaaatgatctc |
505 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
10446189 |
agtgtatatgatctc |
10446175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 4904976 - 4905080
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4904976 |
attgttcaaaggcctcaattctatggctgaaatgaatggagtccctttgcctgtgttaacaagacatggttgtatgtaatcttgtgatggagtgtaaatg |
4905075 |
T |
|
| Q |
501 |
atctc |
505 |
Q |
| |
|
||||| |
|
|
| T |
4905076 |
atctc |
4905080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 401 - 535
Target Start/End: Complemental strand, 4703025 - 4702891
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4703025 |
attgttcaaagtcctcaattcaataactgaaatgaatggagtccctttgcctgtgttaacaagacatggttgtatgtaatctagtgatggagtgtaaatg |
4702926 |
T |
|
| Q |
501 |
atctcactgaatcttatgcgtgatgcattggggaa |
535 |
Q |
| |
|
||||| | ||| | | | |||||||||||||||| |
|
|
| T |
4702925 |
atctccataaatgtgacgagtgatgcattggggaa |
4702891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 4714363 - 4714253
Alignment:
| Q |
399 |
tcattgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaa |
498 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||| ||| | |
|
|
| T |
4714363 |
tcattgttcaaagtcctcaattctataactgaaatgaatggagtcccttttcctgtgttaacaagacatggttgtatgtaatctaataatggagtgtata |
4714264 |
T |
|
| Q |
499 |
tgatctcactg |
509 |
Q |
| |
|
||||||||||| |
|
|
| T |
4714263 |
tgatctcactg |
4714253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 405 - 505
Target Start/End: Complemental strand, 4680891 - 4680791
Alignment:
| Q |
405 |
tccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatgatct |
504 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
4680891 |
tccaaagtcctcaattctatggctgaaatgaacggagtccctttgcctgtgttaacaagacatggttgtatgtaatctagtgatggagtgtatatgatct |
4680792 |
T |
|
| Q |
505 |
c |
505 |
Q |
| |
|
| |
|
|
| T |
4680791 |
c |
4680791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 4890934 - 4891064
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
4890934 |
attgttcaaaggcctcaattctatagctgaaatgaatggagtcccttttcctgtgttaacaagacatggttgtatgtaatctagcgacggagtgtaaatg |
4891033 |
T |
|
| Q |
501 |
atctcactgaatcttatgcgtgatgcattgg |
531 |
Q |
| |
|
|| || |||||| | | | |||||||||||| |
|
|
| T |
4891034 |
atttccctgaatgtgaagagtgatgcattgg |
4891064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 401 - 505
Target Start/End: Complemental strand, 4745264 - 4745160
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4745264 |
attgttcaaactcctcaattctatagctgaaatgaatggagtcctgctgcctgtgttaacaagacatggttgtatgtaatctagtgatggagtgtaaatg |
4745165 |
T |
|
| Q |
501 |
atctc |
505 |
Q |
| |
|
||||| |
|
|
| T |
4745164 |
atctc |
4745160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 4995822 - 4995714
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| ||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||| ||| |
|
|
| T |
4995822 |
attgttcaaaggcctcaattcaatagcagaaatgaatggagtccctttgcctgtgttaacaagacatggttgaatgtaatctagtgatggagtgtatatg |
4995723 |
T |
|
| Q |
501 |
atctcactg |
509 |
Q |
| |
|
||||||||| |
|
|
| T |
4995722 |
atctcactg |
4995714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 407 - 505
Target Start/End: Original strand, 4914097 - 4914195
Alignment:
| Q |
407 |
caaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatgatctc |
505 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||| |||||||| |
|
|
| T |
4914097 |
caaagtcctcaattctaaaactgaaatgaatggagtccctttgcctatgttaacaagacatggttgtatgtgatcttgtgatggagtgtatatgatctc |
4914195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 413 - 505
Target Start/End: Original strand, 21440157 - 21440249
Alignment:
| Q |
413 |
cctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatgatctc |
505 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||| ||||| |
|
|
| T |
21440157 |
cctcaattctatggctgaaatgaatggagtccctttgcctgtgttaacaagacatggttttatgtaatctactgatggagtgtaaataatctc |
21440249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 491
Target Start/End: Complemental strand, 4736267 - 4736178
Alignment:
| Q |
402 |
ttgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatgga |
491 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| || || || |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4736267 |
ttgttcaaagtcctcaattctataactgaaatgaatggagttccgtttcctgtgttaacaaaacatggttgtatgtaatcttgtgatgga |
4736178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 4875927 - 4876031
Alignment:
| Q |
401 |
attgtccaaagtcctcaattctatagctgaaatgaatggagtccctttgccagtgttaacaagacatggttgtatgtaatcttttgatggaaagtaaatg |
500 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||| |||||| ||| ||||||| ||| ||| |
|
|
| T |
4875927 |
attgttcaaagtcctcaattctataactgaaatgaatggagttccatttccagtgttaacaagacatggttctatgtagtctagtgatggagtgtatatg |
4876026 |
T |
|
| Q |
501 |
atctc |
505 |
Q |
| |
|
||||| |
|
|
| T |
4876027 |
atctc |
4876031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 4914001 - 4914062
Alignment:
| Q |
308 |
ttacctgtattctctatttgtgatggaacctaaatcatatctccggaagagtgataacacta |
369 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| | ||| |||||||| |||| |
|
|
| T |
4914001 |
ttacctgtattctctgtttgtgatggaacctaaatcacatcgcttgaaaagtgataatacta |
4914062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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