View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_24 (Length: 554)
Name: NF19786_high_24
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 29064012 - 29063470
Alignment:
| Q |
1 |
gagaaagagaattaataagaggaaaaaa-ttcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaacataaaaactccatt |
99 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29064012 |
gagacagagaattaataagaggaaaaaaattcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaacataaaaactccatt |
29063913 |
T |
|
| Q |
100 |
aaaatgcaacagcatttcaaaggaaaaatgtctcnnnnnnn-ctttctacttttacagggaattttctacactcactcac--actatgttgctggaaagt |
196 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29063912 |
aaaatgcaacagcatttcaaaggaaaaatgtcttttttttttctttctacttttacagggaattttctacactcactcactcactatgttgctggaaagt |
29063813 |
T |
|
| Q |
197 |
gttactctttatcaccacaaacttcaacttttaccccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaatgttgttgagactg |
296 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29063812 |
gttactctttatcaccacaaacttcaacttttacaccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaatgttgctgagactg |
29063713 |
T |
|
| Q |
297 |
tttacaatgtgcaatagctccttcaactgaaccttccacctcataattagcactaatactcctcttaaacaattgtaaatcataattacccgatgaacta |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063712 |
tttacaatgtgcaatagctccttcaactgaaccttccacctcataattagcactaatactcctcttaaacaattgtaaatcataattacccgatgaacta |
29063613 |
T |
|
| Q |
397 |
aacgaaaaagacgaagaatttgaagatgacccggatgaagatgttgataaagatgaaaccttgttgctaccacaatgtctttgaaccactccagagaaag |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063612 |
aacgaaaaagacgaagaatttgaagatgacccggatgaagatgttgacaaagatgaaaccttgttgctaccacaatgtctttgaaccactccagagaaag |
29063513 |
T |
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| Q |
497 |
atttcctatggttgacaaaatcatcttcaaccatgtctctttt |
539 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063512 |
atttcctatggttgacaaaatcatcttcaaccatgtctctttt |
29063470 |
T |
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