View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_high_33 (Length: 457)

Name: NF19786_high_33
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_high_33
NF19786_high_33
[»] chr2 (14 HSPs)
chr2 (10-280)||(44623924-44624196)
chr2 (195-448)||(44614858-44615095)
chr2 (14-134)||(44614737-44614857)
chr2 (115-200)||(39137894-39137979)
chr2 (95-196)||(39152579-39152680)
chr2 (95-196)||(39459256-39459357)
chr2 (113-175)||(39161864-39161926)
chr2 (113-175)||(39207268-39207330)
chr2 (97-175)||(39389096-39389174)
chr2 (94-196)||(39397787-39397889)
chr2 (92-196)||(39370109-39370213)
chr2 (234-277)||(39414622-39414665)
chr2 (196-247)||(39421698-39421749)
chr2 (95-144)||(39468343-39468392)
[»] chr8 (3 HSPs)
chr8 (90-247)||(45342049-45342206)
chr8 (239-280)||(45342230-45342271)
chr8 (412-448)||(45342640-45342676)
[»] chr6 (1 HSPs)
chr6 (95-175)||(16113303-16113383)
[»] chr7 (2 HSPs)
chr7 (245-277)||(19808027-19808059)
chr7 (122-200)||(19807851-19807929)
[»] chr5 (2 HSPs)
chr5 (239-277)||(17059656-17059694)
chr5 (204-245)||(17059589-17059630)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 44623924 - 44624196
Alignment:
Q  10 gaagcaaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatc 109  Q
    |||||||||| |||| |||| |||| ||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  44623924 gaagcaaaggaagagaaattcgaagtaaaaatgcagcaatttgaaaatcaagttgaggacaatctcaaatctgtcaaagcactcgaattaaaagagaatc 44624023  T
Q  110 agattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttgatgaggaaaa 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||  |||||| |||||    
T  44624024 agattgaagtacaaatcaaggatcttaagtcaaagctgaataattttggtggacaaccaaaggagcttgagttgacagagaaacaacatgatgaagaaaa 44624123  T
Q  210 agaatttggtaaatgttgctattcatc--tattttattgatgttgatatttttaataacctgatctacatatt 280  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |||||| |||||    
T  44624124 agaatttggtaaatgttgctattcatctttcttttattgatgttgatatttttaataaccagatctatatatt 44624196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 195 - 448
Target Start/End: Original strand, 44614858 - 44615095
Alignment:
Q  195 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatattt----nnnnnnnnt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  44614858 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatatttaaaaaaaataaat 44614957  T
Q  291 aataatttaatgatgttaatgcagtacttgctattcaactattctatatcacacacataataatcctatttggagttttggatataatatttatcaacta 390  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||              
T  44614958 aataatttaatgatgttaatgcagtacttgcaattcaactattctatatcacacaaataatagtcctatttgtagttttggctataatat---------- 44615047  T
Q  391 aacactactccaataattcactaaggttctatattgactttgaaactgttagtataat 448  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615048 ----------caataattcactaaggttctatattgactttgaaactgttagtataat 44615095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 44614737 - 44614857
Alignment:
Q  14 caaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614737 caaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagat 44614836  T
Q  114 tgaagtacaaatcaaggatct 134  Q
    |||||||||||||||||||||    
T  44614837 tgaagtacaaatcaaggatct 44614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 39137894 - 39137979
Alignment:
Q  115 gaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 200  Q
    |||| ||| |||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||| ||| ||||||||||||||||||||    
T  39137894 gaaggacagatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagcctgaactgacagagaaacaatttga 39137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 39152579 - 39152680
Alignment:
Q  95 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaaca 194  Q
    ||||||||||||| ||| |||||||| ||  ||||||||||||||||||||| |||||   || ||||||    ||||||| |||| |||||||||||||    
T  39152579 agttaaaagagaagcagcttgaagtagaagccaaggatcttgagtcaaagctaaataaacatgatggacagtcgaaggagcatgatttgacagagaaaca 39152678  T
Q  195 at 196  Q
    ||    
T  39152679 at 39152680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 39459256 - 39459357
Alignment:
Q  95 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaaca 194  Q
    |||||||||| || ||  |||||| |||| |||||||||  ||||||||||| |||||||||| ||||||| | ||||||| |||  |||||| ||||||    
T  39459256 agttaaaagacaagcaatttgaaggacaagtcaaggatccagagtcaaagcttaataattttgatggacaagtgaaggagcctgagttgacagtgaaaca 39459355  T
Q  195 at 196  Q
    ||    
T  39459356 at 39459357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 39161864 - 39161926
Alignment:
Q  113 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 175  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39161864 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39161926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 39207330 - 39207268
Alignment:
Q  113 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 175  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39207330 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 39389174 - 39389096
Alignment:
Q  97 ttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 175  Q
    |||||||| || ||| ||||||  ||| |||| |||| |||||||||||||||||| |||| ||||||| |||||||||    
T  39389174 ttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagc 39389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 39397889 - 39397787
Alignment:
Q  94 gagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaac 193  Q
    |||||||||||||| ||| ||| ||  | | ||||||| |||||||||| |||| |||| |||| ||||||||| ||||||| |||  |||||| |||||    
T  39397889 gagttaaaagagaagcaggttgcaggtcgagtcaaggaacttgagtcaaggctggataaatttgatggacaactgaaggagcctgagttgacagggaaac 39397790  T
Q  194 aat 196  Q
    |||    
T  39397789 aat 39397787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 39370109 - 39370213
Alignment:
Q  92 tcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaa 191  Q
    |||| ||||||||||| ||| ||| |  |||| |||||| ||||||||||||| ||||||| || | ||||||||||||| ||| |||   |||| ||||    
T  39370109 tcgaattaaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaattggatggacaactaaagaagcctgagtcgacaaagaa 39370208  T
Q  192 acaat 196  Q
    |||||    
T  39370209 acaat 39370213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 39414665 - 39414622
Alignment:
Q  234 atctattttattgatgttgatatttttaataacctgatctacat 277  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  39414665 atctagtttaatgatgttgatatttttaataatctgatctacat 39414622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 39421749 - 39421698
Alignment:
Q  196 tttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 247  Q
    |||||||||||||| |||| |||||||||||  |||||||||| ||||||||    
T  39421749 tttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattga 39421698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 39468343 - 39468392
Alignment:
Q  95 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaag 144  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| ||||||||    
T  39468343 agttaaaagagaagcagattgaaggacaagtcaaggaacttcagtcaaag 39468392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 90 - 247
Target Start/End: Original strand, 45342049 - 45342206
Alignment:
Q  90 actcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagag 189  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||  ||||| ||    
T  45342049 actccagttaaaagagaatcagtttgaagtgcaaatcaaggaccttgagtcaaagctgaataatttggatggacaaataaaggagcttgagttgacaaag 45342148  T
Q  190 aaacaatttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 247  Q
    |||||||  ||||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  45342149 aaacaatacgatgaggaaaaagaatttggtaaaatttgttattcatctagtttattga 45342206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 45342230 - 45342271
Alignment:
Q  239 ttttattgatgttgatatttttaataacctgatctacatatt 280  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  45342230 ttttgttgatgttgatatttttaataacctgatctacatatt 45342271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 448
Target Start/End: Original strand, 45342640 - 45342676
Alignment:
Q  412 taaggttctatattgactttgaaactgttagtataat 448  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45342640 taaggttctatattgactttgtaattgttagtataat 45342676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 16113303 - 16113383
Alignment:
Q  95 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 175  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||  | ||||| |||||||| |||||||    
T  16113303 agttaaaagagaagcagattgaagtacaagtcaaggagcttgagtcaaagctgaacgaatttggcggacaactgaaggagc 16113383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 19808027 - 19808059
Alignment:
Q  245 tgatgttgatatttttaataacctgatctacat 277  Q
    |||||||||||||||||||||||||||||||||    
T  19808027 tgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 19807851 - 19807929
Alignment:
Q  122 aaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 200  Q
    |||||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||  |||  |||||||||||||||||||    
T  19807851 aaatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttga 19807929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 17059656 - 17059694
Alignment:
Q  239 ttttattgatgttgatatttttaataacctgatctacat 277  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  17059656 ttttattgatgttgctatttttaatatcctgatctacat 17059694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 17059589 - 17059630
Alignment:
Q  204 ggaaaaagaatttggtaaatgttgctattcatctattttatt 245  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  17059589 ggaaaatgaatttggtaaatgttgttattcatctagtttatt 17059630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University