View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_40 (Length: 438)
Name: NF19786_high_40
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 38633049 - 38633461
Alignment:
| Q |
11 |
caaaggaaccagaaaatgagtaacagaacataaactgaaaagtaccgagtgtgattgtannnnnnnnnn------gtgaatcggatatcctctatgcaca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38633049 |
caaaggaaccagaaaatgagtaacagaacataaactgaaaagtaccgagtgtgattgtattttttttttttttttgtgaatcggatatcctctatgcaca |
38633148 |
T |
|
| Q |
105 |
actgcgcatattaaatctctcgagtcagatagaaccactttccacaagagatttagcactattgcgctgcattttcagggttctattcaaaccttggacc |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38633149 |
actgcacatattaaatctctcgagtcagatagaaccactttccacaagagatttagcactattgcgctgcattttcagggttctattcgaaccttggacc |
38633248 |
T |
|
| Q |
205 |
ttaagcatctcattcaagtgctctttggtgattcacatatttagtattcataattaaagttgtagataactgtttacttaagagttaattaaattagtga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38633249 |
ttaagcatctcattcaagtgctctttggtgattcacatatttagtattcataattaaagttgtagataactgtttacttaagagttaa-taaattagtga |
38633347 |
T |
|
| Q |
305 |
agacatattgggtggattaataactgtattaactattaacctatgaaacaaagacactcctcgttttcatgtcgacgtcgtgttttgtgtcgtgtatgtg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
38633348 |
agacatattgggtggattaataactgtattaactattaacctatgaaacaaagacactcctcgttttcatgttgatgtcgtgttttgtgtcgtgtctgtg |
38633447 |
T |
|
| Q |
405 |
cttcatagccatgt |
418 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
38633448 |
cttcatagctatgt |
38633461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 35202996 - 35203054
Alignment:
| Q |
259 |
taaagttgtagataactgtttacttaagagttaattaaattagtgaagacatattgggtg |
318 |
Q |
| |
|
||||| |||| ||||||||| | ||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
35202996 |
taaaggtgtatataactgttaa-ttaagagttaattaagttaatgaagacatattgggtg |
35203054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University