View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_high_49 (Length: 371)

Name: NF19786_high_49
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_high_49
NF19786_high_49
[»] scaffold0016 (4 HSPs)
scaffold0016 (16-358)||(61537-61880)
scaffold0016 (162-223)||(71949-72010)
scaffold0016 (70-114)||(47136-47180)
scaffold0016 (66-114)||(71829-71877)
[»] chr6 (4 HSPs)
chr6 (71-114)||(21197833-21197876)
chr6 (162-223)||(21182229-21182290)
chr6 (71-114)||(21267605-21267648)
chr6 (162-202)||(21137219-21137259)
[»] scaffold0076 (1 HSPs)
scaffold0076 (70-112)||(18357-18399)
[»] scaffold0272 (1 HSPs)
scaffold0272 (162-223)||(11390-11451)
[»] scaffold0060 (1 HSPs)
scaffold0060 (224-280)||(23642-23698)
[»] chr7 (2 HSPs)
chr7 (162-225)||(11843839-11843902)
chr7 (70-104)||(11843945-11843979)


Alignment Details
Target: scaffold0016 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 61537 - 61880
Alignment:
Q  16 caggtcgttggttccttctatgttaggctcattcggtttgaatcagactcctattatctactccatgtatacataaaatcaagaaaatccatattgctaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61537 caggtcgttggttccttctatgttaggctcattcggtttgaatcagactcctattatctactccatgtatacataaaatcaagaaaatccatattgctaa 61636  T
Q  116 atctatatataatcagagtaaaatggaaaggcaaaaagtctaattccatattctagcattctccattgataagcactcaaaaatctt-ggtgattaattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  61637 atctatatataatcagagtaaaatggaaaggcaaaaagtctaattccatattctagcattctccattgataagcactcaaaaatcttgggtgattaattt 61736  T
Q  215 tcaattcactatggaattttaggaacacaaatgcttcaaataaattgtgataagagctttgaaagaaactccaatgagatatcatcaatgaggagctgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61737 tcaattcactatggaattttaggaacacaaatgcttcaaataaattgtgataagagctttgaaagaaactccaatgagatatcatcaatgaggagctgat 61836  T
Q  315 caatctgtctacttccaatcaatgagtttcctcctagtttgttc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  61837 caatctgtctacttccaatcaatgagtttcctcctagtttgttc 61880  T

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Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 71949 - 72010
Alignment:
Q  162 catattctagcattctccattgataagcactcaaaaatcttggtgattaattttcaattcac 223  Q
    |||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||    
T  71949 catattcgtgcattctccattgataatcactcaataatcttgttgattaattttcgattcac 72010  T

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Target: scaffold0016; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 47136 - 47180
Alignment:
Q  70 tatctactccatgtatacataaaatcaagaaaatccatattgcta 114  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    
T  47136 tatctactccatatatatataaaatcaagaaaatccatattgcta 47180  T

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Target: scaffold0016; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 71829 - 71877
Alignment:
Q  66 ctattatctactccatgtatacataaaatcaagaaaatccatattgcta 114  Q
    |||||||||||||| | |||||||||||| ||||||||||| |||||||    
T  71829 ctattatctactccgtatatacataaaattaagaaaatccaaattgcta 71877  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 21197876 - 21197833
Alignment:
Q  71 atctactccatgtatacataaaatcaagaaaatccatattgcta 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  21197876 atctactccatgtatacataaaatcaagaaaatcgatattgcta 21197833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 21182290 - 21182229
Alignment:
Q  162 catattctagcattctccattgataagcactcaaaaatcttggtgattaattttcaattcac 223  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||  ||||||||||| ||||||    
T  21182290 catattctagctttctccattgataatcactcaataattttgtggattaattttcgattcac 21182229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 21267648 - 21267605
Alignment:
Q  71 atctactccatgtatacataaaatcaagaaaatccatattgcta 114  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||    
T  21267648 atctaatccatgtttacataaaatcaagaaaatgcatattgcta 21267605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 21137259 - 21137219
Alignment:
Q  162 catattctagcattctccattgataagcactcaaaaatctt 202  Q
    |||||||||| |||||| |||||||||||||||| ||||||    
T  21137259 catattctagtattctcaattgataagcactcaataatctt 21137219  T

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Target: scaffold0076 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 18399 - 18357
Alignment:
Q  70 tatctactccatgtatacataaaatcaagaaaatccatattgc 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  18399 tatctactccatgtatacataaaatcaagaaaatccaaattgc 18357  T

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Target: scaffold0272 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 11451 - 11390
Alignment:
Q  162 catattctagcattctccattgataagcactcaaaaatcttggtgattaattttcaattcac 223  Q
    |||||||  ||||||||||||| ||| ||||||| ||||||| |||||||||||| ||||||    
T  11451 catattcgtgcattctccattggtaatcactcaataatcttgttgattaattttcgattcac 11390  T

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Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 23642 - 23698
Alignment:
Q  224 tatggaattttaggaacacaaatgcttcaaataaattgtgataagagctttgaaaga 280  Q
    |||||||||| || ||||||||||| ||||||||||||| | ||||||||| |||||    
T  23642 tatggaatttcagaaacacaaatgcatcaaataaattgtaaaaagagctttaaaaga 23698  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 11843902 - 11843839
Alignment:
Q  162 catattctagcattctccattgataagcactcaaaaatcttggtgattaattttcaattcacta 225  Q
    |||||| ||||| ||||||||||||||||||||| |||||||   |||||||||  ||||||||    
T  11843902 catattatagcactctccattgataagcactcaataatcttgtgcattaatttttgattcacta 11843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 11843979 - 11843945
Alignment:
Q  70 tatctactccatgtatacataaaatcaagaaaatc 104  Q
    |||||||||||| ||||||||||||||||||||||    
T  11843979 tatctactccatatatacataaaatcaagaaaatc 11843945  T

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